RNA–Protein interactions for RNA: ENST00000568153.1

CAPN3-218, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-218ENST00000568153 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
CAPN3-218ENST00000568153 CHIC1Q5VXU3 224 aa22.61■■□□□ 1.21
CAPN3-218ENST00000568153 PHF23Q9BUL5 403 aaPredicted RBP19.9■□□□□ 0.78
CAPN3-218ENST00000568153 SENP3Q9H4L4 574 aaPredicted RBP19.83■□□□□ 0.77
CAPN3-218ENST00000568153 FOXD1Q16676 465 aa18.45■□□□□ 0.54
CAPN3-218ENST00000568153 PLPPR3Q6T4P5 718 aa18.24■□□□□ 0.51
CAPN3-218ENST00000568153 PPP6R1Q9UPN7 881 aa17.61■□□□□ 0.41
CAPN3-218ENST00000568153 ADRA2BP18089 450 aa17.56■□□□□ 0.4
CAPN3-218ENST00000568153 PIAS4Q8N2W9 510 aaPredicted RBP17.32■□□□□ 0.36
CAPN3-218ENST00000568153 MSH5O43196 834 aa17.07■□□□□ 0.32
CAPN3-218ENST00000568153 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
CAPN3-218ENST00000568153 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
CAPN3-218ENST00000568153 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
CAPN3-218ENST00000568153 POTEDQ86YR6 584 aa15.93■□□□□ 0.14
CAPN3-218ENST00000568153 DMRT2Q9Y5R5 561 aa15.82■□□□□ 0.12
CAPN3-218ENST00000568153 CNKSR2Q8WXI2 1034 aa15.65■□□□□ 0.1
CAPN3-218ENST00000568153 NCBP3Q53F19 620 aaKnown RBP15.53■□□□□ 0.08
CAPN3-218ENST00000568153 KCNA4P22459 653 aa15.46■□□□□ 0.07
CAPN3-218ENST00000568153 HOXD11P31277 338 aaPredicted RBP15.42■□□□□ 0.06
CAPN3-218ENST00000568153 RNF216Q9NWF9 866 aaPredicted RBP15.4■□□□□ 0.06
CAPN3-218ENST00000568153 NPM3O75607 178 aaKnown RBP15.36■□□□□ 0.05
CAPN3-218ENST00000568153 DCAF8L1A6NGE4 600 aa15.06■□□□□ 0
CAPN3-218ENST00000568153 DNAJC5BQ9UF47 199 aa15□□□□□ -0.01
CAPN3-218ENST00000568153 SLC4A1APQ9BWU0 796 aaKnown RBP14.66□□□□□ -0.06
CAPN3-218ENST00000568153 RNF39Q9H2S5 420 aa14.64□□□□□ -0.07
CAPN3-218ENST00000568153 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
CAPN3-218ENST00000568153 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
CAPN3-218ENST00000568153 U3KPZ7 1027 aaPredicted RBP14.43□□□□□ -0.1
CAPN3-218ENST00000568153 C1QBPQ07021 282 aaKnown RBP14.42□□□□□ -0.1
CAPN3-218ENST00000568153 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
CAPN3-218ENST00000568153 CACNB1Q02641 598 aaPredicted RBP14.34□□□□□ -0.11
CAPN3-218ENST00000568153 FOXD4L1Q9NU39 408 aa14.27□□□□□ -0.13
CAPN3-218ENST00000568153 ZBTB22O15209 634 aa14.26□□□□□ -0.13
CAPN3-218ENST00000568153 MYCNP04198 464 aaPredicted RBP14.18□□□□□ -0.14
CAPN3-218ENST00000568153 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
CAPN3-218ENST00000568153 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.12□□□□□ -0.15
CAPN3-218ENST00000568153 HNRNPUL2Q1KMD3 747 aaKnown RBP14.12□□□□□ -0.15
CAPN3-218ENST00000568153 SPINK5Q9NQ38 1064 aaPredicted RBP14.08□□□□□ -0.16
CAPN3-218ENST00000568153 SAMD1Q6SPF0 538 aaPredicted RBP14.07□□□□□ -0.16
CAPN3-218ENST00000568153 APLP2Q06481 763 aa14□□□□□ -0.17
CAPN3-218ENST00000568153 CAPN15O75808 1086 aa13.98□□□□□ -0.17
CAPN3-218ENST00000568153 ZNF219Q9P2Y4 722 aaPredicted RBP13.87□□□□□ -0.19
CAPN3-218ENST00000568153 TRHP20396 242 aaPredicted RBP13.86□□□□□ -0.19
CAPN3-218ENST00000568153 DSG3P32926 999 aa13.85□□□□□ -0.19
CAPN3-218ENST00000568153 ATF5Q9Y2D1 282 aaPredicted RBP13.85□□□□□ -0.19
CAPN3-218ENST00000568153 ATXN8OSP0DMR3 200 aa13.8□□□□□ -0.2
CAPN3-218ENST00000568153 ABCB7O75027 752 aa13.72□□□□□ -0.21
CAPN3-218ENST00000568153 POLA2Q14181 598 aa13.62□□□□□ -0.23
CAPN3-218ENST00000568153 NISCHQ9Y2I1 1504 aa13.54□□□□□ -0.24
CAPN3-218ENST00000568153 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
CAPN3-218ENST00000568153 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
CAPN3-218ENST00000568153 FBLN2P98095 1184 aa13.21□□□□□ -0.29
CAPN3-218ENST00000568153 OSCARQ8IYS5 282 aa13.19□□□□□ -0.3
CAPN3-218ENST00000568153 RBM42Q9BTD8 480 aaKnown RBP13.16□□□□□ -0.3
CAPN3-218ENST00000568153 SPDYE2BA6NHP3 402 aa13.01□□□□□ -0.33
CAPN3-218ENST00000568153 SPDYE6P0CI01 402 aa13.01□□□□□ -0.33
CAPN3-218ENST00000568153 SPDYE2Q495Y8 402 aa13.01□□□□□ -0.33
CAPN3-218ENST00000568153 AKT1S1Q96B36 256 aa12.97□□□□□ -0.33
CAPN3-218ENST00000568153 SSUH2Q9Y2M2 353 aa12.92□□□□□ -0.34
CAPN3-218ENST00000568153 ZNF692Q9BU19 519 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-218ENST00000568153 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-218ENST00000568153 SPDYE4A6NLX3 237 aa12.8□□□□□ -0.36
CAPN3-218ENST00000568153 FKBP8Q14318 412 aa12.76□□□□□ -0.37
CAPN3-218ENST00000568153 PABPN1Q86U42 306 aaKnown RBP eCLIP12.74□□□□□ -0.37
CAPN3-218ENST00000568153 PITPNM1O00562 1244 aa12.73□□□□□ -0.37
CAPN3-218ENST00000568153 CHRDL2Q6WN34 429 aa12.72□□□□□ -0.37
CAPN3-218ENST00000568153 SPDYE1Q8NFV5 336 aaPredicted RBP12.66□□□□□ -0.38
CAPN3-218ENST00000568153 PROM2Q8N271 834 aa12.63□□□□□ -0.39
CAPN3-218ENST00000568153 CLEC11AQ9Y240 323 aa12.58□□□□□ -0.4
CAPN3-218ENST00000568153 POTEHQ6S545 545 aa12.56□□□□□ -0.4
CAPN3-218ENST00000568153 FXR2P51116 673 aaKnown RBP eCLIP12.54□□□□□ -0.4
CAPN3-218ENST00000568153 PIP4P2Q8N4L2 257 aa12.53□□□□□ -0.4
CAPN3-218ENST00000568153 STAG3Q9UJ98 1225 aa12.46□□□□□ -0.41
CAPN3-218ENST00000568153 PRR29P0C7W0 189 aa12.45□□□□□ -0.42
CAPN3-218ENST00000568153 PRKAR2AP13861 404 aaKnown RBP12.38□□□□□ -0.43
CAPN3-218ENST00000568153 CHADLQ6NUI6 762 aa12.33□□□□□ -0.44
CAPN3-218ENST00000568153 CREBZFQ9NS37 354 aa12.3□□□□□ -0.44
CAPN3-218ENST00000568153 FBXO3Q9UK99 471 aa12.23□□□□□ -0.45
CAPN3-218ENST00000568153 FARP1Q9Y4F1 1045 aaPredicted RBP12.21□□□□□ -0.45
CAPN3-218ENST00000568153 MNX1P50219 401 aaPredicted RBP12.17□□□□□ -0.46
CAPN3-218ENST00000568153 MIER1Q8N108 512 aa12.13□□□□□ -0.47
CAPN3-218ENST00000568153 HAX1O00165 279 aa12.12□□□□□ -0.47
CAPN3-218ENST00000568153 C19orf67A6NJJ6 358 aa12.11□□□□□ -0.47
CAPN3-218ENST00000568153 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
CAPN3-218ENST00000568153 EVX2Q03828 476 aa12.08□□□□□ -0.48
CAPN3-218ENST00000568153 PLCD3Q8N3E9 789 aa12.08□□□□□ -0.48
CAPN3-218ENST00000568153 PLEKHG5O94827 1062 aa12.05□□□□□ -0.48
CAPN3-218ENST00000568153 NPM1P06748 294 aaKnown RBP eCLIP12.03□□□□□ -0.48
CAPN3-218ENST00000568153 CD44P16070 742 aaKnown RBP12.01□□□□□ -0.49
CAPN3-218ENST00000568153 SP7Q8TDD2 431 aaPredicted RBP11.98□□□□□ -0.49
CAPN3-218ENST00000568153 IFNLR1Q8IU57 520 aaPredicted RBP11.97□□□□□ -0.49
CAPN3-218ENST00000568153 ZBTB47Q9UFB7 747 aaPredicted RBP11.96□□□□□ -0.49
CAPN3-218ENST00000568153 NUBP1P53384 320 aa11.9□□□□□ -0.5
CAPN3-218ENST00000568153 ZRANB1Q9UGI0 708 aa11.9□□□□□ -0.5
CAPN3-218ENST00000568153 RASEFQ8IZ41 740 aa11.89□□□□□ -0.51
CAPN3-218ENST00000568153 ZNF579Q8NAF0 562 aaKnown RBP11.87□□□□□ -0.51
CAPN3-218ENST00000568153 PAK3O75914 559 aaPredicted RBP11.86□□□□□ -0.51
CAPN3-218ENST00000568153 KLHL34Q8N239 644 aa11.85□□□□□ -0.51
CAPN3-218ENST00000568153 TSPYL2Q9H2G4 693 aaPredicted RBP11.84□□□□□ -0.51
CAPN3-218ENST00000568153 GABBR2O75899 941 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms