RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 AEBP2Q6ZN18 517 aaPredicted RBP24.06■■□□□ 1.44
SPG11-204ENST00000557866 CHIC1Q5VXU3 224 aa23.14■■□□□ 1.29
SPG11-204ENST00000557866 SENP3Q9H4L4 574 aaPredicted RBP20.56■□□□□ 0.88
SPG11-204ENST00000557866 PHF23Q9BUL5 403 aaPredicted RBP20.31■□□□□ 0.84
SPG11-204ENST00000557866 FOXD1Q16676 465 aa19.09■□□□□ 0.65
SPG11-204ENST00000557866 PLPPR3Q6T4P5 718 aa18.64■□□□□ 0.57
SPG11-204ENST00000557866 POTEDQ86YR6 584 aa18.03■□□□□ 0.48
SPG11-204ENST00000557866 PPP6R1Q9UPN7 881 aa18.02■□□□□ 0.48
SPG11-204ENST00000557866 ADRA2BP18089 450 aa17.99■□□□□ 0.47
SPG11-204ENST00000557866 PIAS4Q8N2W9 510 aaPredicted RBP17.91■□□□□ 0.46
SPG11-204ENST00000557866 MSH5O43196 834 aa17.82■□□□□ 0.44
SPG11-204ENST00000557866 NISCHQ9Y2I1 1504 aa16.61■□□□□ 0.25
SPG11-204ENST00000557866 SCAF1Q9H7N4 1312 aaKnown RBP16.56■□□□□ 0.24
SPG11-204ENST00000557866 MAPK8IP2Q13387 824 aaPredicted RBP16.44■□□□□ 0.22
SPG11-204ENST00000557866 PPP4R3CPQ6ZMV5 832 aa16.35■□□□□ 0.21
SPG11-204ENST00000557866 DMRT2Q9Y5R5 561 aa16.32■□□□□ 0.2
SPG11-204ENST00000557866 CNKSR2Q8WXI2 1034 aa16.01■□□□□ 0.15
SPG11-204ENST00000557866 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
SPG11-204ENST00000557866 HOXD11P31277 338 aaPredicted RBP15.83■□□□□ 0.12
SPG11-204ENST00000557866 RNF216Q9NWF9 866 aaPredicted RBP15.8■□□□□ 0.12
SPG11-204ENST00000557866 DCAF8L1A6NGE4 600 aa15.64■□□□□ 0.09
SPG11-204ENST00000557866 NPM3O75607 178 aaKnown RBP15.55■□□□□ 0.08
SPG11-204ENST00000557866 CACNB1Q02641 598 aaPredicted RBP15.5■□□□□ 0.07
SPG11-204ENST00000557866 KCNA4P22459 653 aa15.46■□□□□ 0.07
SPG11-204ENST00000557866 DNAJC5BQ9UF47 199 aa15.29■□□□□ 0.04
SPG11-204ENST00000557866 RNF39Q9H2S5 420 aa15.2■□□□□ 0.02
SPG11-204ENST00000557866 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.01
SPG11-204ENST00000557866 C1QBPQ07021 282 aaKnown RBP15.03■□□□□ -0
SPG11-204ENST00000557866 SLC4A2P04920 1241 aa14.77□□□□□ -0.05
SPG11-204ENST00000557866 U3KPZ7 1027 aaPredicted RBP14.76□□□□□ -0.05
SPG11-204ENST00000557866 SLC4A1APQ9BWU0 796 aaKnown RBP14.68□□□□□ -0.06
SPG11-204ENST00000557866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
SPG11-204ENST00000557866 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
SPG11-204ENST00000557866 APLP2Q06481 763 aa14.49□□□□□ -0.09
SPG11-204ENST00000557866 CAPN15O75808 1086 aa14.47□□□□□ -0.09
SPG11-204ENST00000557866 SPINK5Q9NQ38 1064 aaPredicted RBP14.47□□□□□ -0.09
SPG11-204ENST00000557866 SAMD1Q6SPF0 538 aaPredicted RBP14.42□□□□□ -0.1
SPG11-204ENST00000557866 MYCNP04198 464 aaPredicted RBP14.41□□□□□ -0.1
SPG11-204ENST00000557866 FOXD4L1Q9NU39 408 aa14.38□□□□□ -0.11
SPG11-204ENST00000557866 CCDC180Q9P1Z9 1646 aa14.34□□□□□ -0.11
SPG11-204ENST00000557866 DSG3P32926 999 aa14.31□□□□□ -0.12
SPG11-204ENST00000557866 ZNF219Q9P2Y4 722 aaPredicted RBP14.31□□□□□ -0.12
SPG11-204ENST00000557866 TRHP20396 242 aaPredicted RBP14.29□□□□□ -0.12
SPG11-204ENST00000557866 ZBTB22O15209 634 aa14.18□□□□□ -0.14
SPG11-204ENST00000557866 ABCB7O75027 752 aa14.12□□□□□ -0.15
SPG11-204ENST00000557866 POTEHQ6S545 545 aa14.06□□□□□ -0.16
SPG11-204ENST00000557866 ATF5Q9Y2D1 282 aaPredicted RBP13.99□□□□□ -0.17
SPG11-204ENST00000557866 POLA2Q14181 598 aa13.98□□□□□ -0.17
SPG11-204ENST00000557866 ATXN8OSP0DMR3 200 aa13.97□□□□□ -0.17
SPG11-204ENST00000557866 ZCCHC6Q5VYS8 1495 aaKnown RBP13.96□□□□□ -0.17
SPG11-204ENST00000557866 CSRNP3Q8WYN3 585 aa13.81□□□□□ -0.2
SPG11-204ENST00000557866 ZBTB12Q9Y330 459 aaPredicted RBP13.76□□□□□ -0.21
SPG11-204ENST00000557866 DCAF8L2P0C7V8 631 aa13.74□□□□□ -0.21
SPG11-204ENST00000557866 EHMT2Q96KQ7 1210 aa13.73□□□□□ -0.21
SPG11-204ENST00000557866 DCAF1Q9Y4B6 1507 aa13.71□□□□□ -0.21
SPG11-204ENST00000557866 RBM42Q9BTD8 480 aaKnown RBP13.7□□□□□ -0.22
SPG11-204ENST00000557866 ABCC9O60706 1549 aa13.66□□□□□ -0.22
SPG11-204ENST00000557866 SHROOM4Q9ULL8 1493 aa13.63□□□□□ -0.23
SPG11-204ENST00000557866 FBLN2P98095 1184 aa13.52□□□□□ -0.25
SPG11-204ENST00000557866 MYO15BQ96JP2 1530 aa13.52□□□□□ -0.25
SPG11-204ENST00000557866 OSCARQ8IYS5 282 aa13.47□□□□□ -0.25
SPG11-204ENST00000557866 AKT1S1Q96B36 256 aa13.43□□□□□ -0.26
SPG11-204ENST00000557866 NACADO15069 1562 aa13.42□□□□□ -0.26
SPG11-204ENST00000557866 MKRN4PQ13434 485 aaPredicted RBP13.37□□□□□ -0.27
SPG11-204ENST00000557866 SPDYE2BA6NHP3 402 aa13.33□□□□□ -0.28
SPG11-204ENST00000557866 SPDYE6P0CI01 402 aa13.33□□□□□ -0.28
SPG11-204ENST00000557866 SPDYE2Q495Y8 402 aa13.33□□□□□ -0.28
SPG11-204ENST00000557866 CHRDL2Q6WN34 429 aa13.29□□□□□ -0.28
SPG11-204ENST00000557866 SCRIBQ14160 1630 aa13.28□□□□□ -0.28
SPG11-204ENST00000557866 REM2Q8IYK8 340 aaPredicted RBP13.27□□□□□ -0.29
SPG11-204ENST00000557866 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.29
SPG11-204ENST00000557866 ZNF692Q9BU19 519 aaPredicted RBP13.21□□□□□ -0.29
SPG11-204ENST00000557866 SSUH2Q9Y2M2 353 aa13.15□□□□□ -0.3
SPG11-204ENST00000557866 SUPT5HO00267 1087 aaKnown RBP13.12□□□□□ -0.31
SPG11-204ENST00000557866 PITPNM1O00562 1244 aa13.1□□□□□ -0.31
SPG11-204ENST00000557866 SPDYE1Q8NFV5 336 aaPredicted RBP13.04□□□□□ -0.32
SPG11-204ENST00000557866 PABPN1Q86U42 306 aaKnown RBP eCLIP13□□□□□ -0.33
SPG11-204ENST00000557866 SP7Q8TDD2 431 aaPredicted RBP13□□□□□ -0.33
SPG11-204ENST00000557866 PIP4P2Q8N4L2 257 aa12.99□□□□□ -0.33
SPG11-204ENST00000557866 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
SPG11-204ENST00000557866 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
SPG11-204ENST00000557866 CECR2Q9BXF3 1484 aa12.96□□□□□ -0.34
SPG11-204ENST00000557866 RSF1Q96T23 1441 aaPredicted RBP12.95□□□□□ -0.34
SPG11-204ENST00000557866 UNC13AQ9UPW8 1703 aa12.94□□□□□ -0.34
SPG11-204ENST00000557866 BICRAQ9NZM4 1560 aa12.94□□□□□ -0.34
SPG11-204ENST00000557866 SPDYE4A6NLX3 237 aa12.92□□□□□ -0.34
SPG11-204ENST00000557866 MROH2BQ7Z745 1585 aa12.86□□□□□ -0.35
SPG11-204ENST00000557866 PRR29P0C7W0 189 aa12.83□□□□□ -0.36
SPG11-204ENST00000557866 PRKAR2AP13861 404 aaKnown RBP12.79□□□□□ -0.36
SPG11-204ENST00000557866 BAZ1AQ9NRL2 1556 aaPredicted RBP12.77□□□□□ -0.36
SPG11-204ENST00000557866 STAG3Q9UJ98 1225 aa12.77□□□□□ -0.37
SPG11-204ENST00000557866 HAX1O00165 279 aa12.75□□□□□ -0.37
SPG11-204ENST00000557866 SMARCA4P51532 1647 aa12.72□□□□□ -0.37
SPG11-204ENST00000557866 WIZO95785 1651 aa12.7□□□□□ -0.38
SPG11-204ENST00000557866 CHADLQ6NUI6 762 aa12.67□□□□□ -0.38
SPG11-204ENST00000557866 PROM2Q8N271 834 aa12.63□□□□□ -0.39
SPG11-204ENST00000557866 TOP2AP11388 1531 aaKnown RBP12.57□□□□□ -0.4
SPG11-204ENST00000557866 ATAD2BQ9ULI0 1458 aa12.57□□□□□ -0.4
SPG11-204ENST00000557866 PEG3Q9GZU2 1588 aa12.56□□□□□ -0.4
SPG11-204ENST00000557866 EVX2Q03828 476 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms