RNA–Protein interactions for RNA: ENST00000557261.1

FOXN3-215, Transcript of forkhead box N3, humanhuman

TSL 4

Gene FOXN3, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-215ENST00000557261 AEBP2Q6ZN18 517 aaPredicted RBP22.11■■□□□ 1.13
FOXN3-215ENST00000557261 CHIC1Q5VXU3 224 aa21.08■□□□□ 0.97
FOXN3-215ENST00000557261 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
FOXN3-215ENST00000557261 PHF23Q9BUL5 403 aaPredicted RBP18.59■□□□□ 0.57
FOXN3-215ENST00000557261 FOXD1Q16676 465 aa17.53■□□□□ 0.4
FOXN3-215ENST00000557261 PLPPR3Q6T4P5 718 aa16.88■□□□□ 0.29
FOXN3-215ENST00000557261 PPP6R1Q9UPN7 881 aa16.47■□□□□ 0.23
FOXN3-215ENST00000557261 PIAS4Q8N2W9 510 aaPredicted RBP16.45■□□□□ 0.22
FOXN3-215ENST00000557261 ADRA2BP18089 450 aa16.44■□□□□ 0.22
FOXN3-215ENST00000557261 MSH5O43196 834 aa16.37■□□□□ 0.21
FOXN3-215ENST00000557261 POTEDQ86YR6 584 aa15.81■□□□□ 0.12
FOXN3-215ENST00000557261 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
FOXN3-215ENST00000557261 EHMT2Q96KQ7 1210 aa15.05■□□□□ -0
FOXN3-215ENST00000557261 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
FOXN3-215ENST00000557261 KCNA4P22459 653 aa14.94□□□□□ -0.02
FOXN3-215ENST00000557261 DMRT2Q9Y5R5 561 aa14.94□□□□□ -0.02
FOXN3-215ENST00000557261 PPP4R3CPQ6ZMV5 832 aa14.82□□□□□ -0.04
FOXN3-215ENST00000557261 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
FOXN3-215ENST00000557261 HOXD11P31277 338 aaPredicted RBP14.42□□□□□ -0.1
FOXN3-215ENST00000557261 CSRNP3Q8WYN3 585 aa14.42□□□□□ -0.1
FOXN3-215ENST00000557261 DCAF8L1A6NGE4 600 aa14.37□□□□□ -0.11
FOXN3-215ENST00000557261 RNF216Q9NWF9 866 aaPredicted RBP14.34□□□□□ -0.11
FOXN3-215ENST00000557261 SLC4A1APQ9BWU0 796 aaKnown RBP14.27□□□□□ -0.13
FOXN3-215ENST00000557261 NCBP3Q53F19 620 aaKnown RBP14.26□□□□□ -0.13
FOXN3-215ENST00000557261 NPM3O75607 178 aaKnown RBP14.09□□□□□ -0.15
FOXN3-215ENST00000557261 CACNB1Q02641 598 aaPredicted RBP13.99□□□□□ -0.17
FOXN3-215ENST00000557261 RNF39Q9H2S5 420 aa13.98□□□□□ -0.17
FOXN3-215ENST00000557261 DNAJC5BQ9UF47 199 aa13.87□□□□□ -0.19
FOXN3-215ENST00000557261 ZBTB22O15209 634 aa13.85□□□□□ -0.19
FOXN3-215ENST00000557261 C1QBPQ07021 282 aaKnown RBP13.77□□□□□ -0.21
FOXN3-215ENST00000557261 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.77□□□□□ -0.21
FOXN3-215ENST00000557261 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
FOXN3-215ENST00000557261 U3KPZ7 1027 aaPredicted RBP13.5□□□□□ -0.25
FOXN3-215ENST00000557261 NISCHQ9Y2I1 1504 aa13.49□□□□□ -0.25
FOXN3-215ENST00000557261 RTN4Q9NQC3 1192 aaKnown RBP13.48□□□□□ -0.25
FOXN3-215ENST00000557261 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
FOXN3-215ENST00000557261 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
FOXN3-215ENST00000557261 SPINK5Q9NQ38 1064 aaPredicted RBP13.28□□□□□ -0.28
FOXN3-215ENST00000557261 CAPN15O75808 1086 aa13.25□□□□□ -0.29
FOXN3-215ENST00000557261 AMER1Q5JTC6 1135 aaPredicted RBP13.21□□□□□ -0.29
FOXN3-215ENST00000557261 DSG3P32926 999 aa13.13□□□□□ -0.31
FOXN3-215ENST00000557261 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-215ENST00000557261 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
FOXN3-215ENST00000557261 APLP2Q06481 763 aa13.1□□□□□ -0.31
FOXN3-215ENST00000557261 TRHP20396 242 aaPredicted RBP13.06□□□□□ -0.32
FOXN3-215ENST00000557261 SAMD1Q6SPF0 538 aaPredicted RBP13.06□□□□□ -0.32
FOXN3-215ENST00000557261 MYCNP04198 464 aaPredicted RBP13.03□□□□□ -0.32
FOXN3-215ENST00000557261 ZNF219Q9P2Y4 722 aaPredicted RBP13.03□□□□□ -0.32
FOXN3-215ENST00000557261 ABCB7O75027 752 aa12.98□□□□□ -0.33
FOXN3-215ENST00000557261 FKBP8Q14318 412 aa12.94□□□□□ -0.34
FOXN3-215ENST00000557261 ATF5Q9Y2D1 282 aaPredicted RBP12.72□□□□□ -0.37
FOXN3-215ENST00000557261 POLA2Q14181 598 aa12.7□□□□□ -0.38
FOXN3-215ENST00000557261 ATXN8OSP0DMR3 200 aa12.64□□□□□ -0.39
FOXN3-215ENST00000557261 RBM42Q9BTD8 480 aaKnown RBP12.53□□□□□ -0.4
FOXN3-215ENST00000557261 ZBTB12Q9Y330 459 aaPredicted RBP12.47□□□□□ -0.41
FOXN3-215ENST00000557261 POTEHQ6S545 545 aa12.42□□□□□ -0.42
FOXN3-215ENST00000557261 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
FOXN3-215ENST00000557261 PLCB2Q00722 1185 aa12.25□□□□□ -0.45
FOXN3-215ENST00000557261 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
FOXN3-215ENST00000557261 CHRDL2Q6WN34 429 aa12.22□□□□□ -0.45
FOXN3-215ENST00000557261 PRKCSHP14314 528 aaPredicted RBP12.21□□□□□ -0.45
FOXN3-215ENST00000557261 FBLN2P98095 1184 aa12.21□□□□□ -0.45
FOXN3-215ENST00000557261 MKRN4PQ13434 485 aaPredicted RBP12.15□□□□□ -0.46
FOXN3-215ENST00000557261 HAP1P54257 671 aaPredicted RBP12.14□□□□□ -0.47
FOXN3-215ENST00000557261 REM2Q8IYK8 340 aaPredicted RBP12.13□□□□□ -0.47
FOXN3-215ENST00000557261 SPDYE2BA6NHP3 402 aa12.09□□□□□ -0.47
FOXN3-215ENST00000557261 SPDYE6P0CI01 402 aa12.09□□□□□ -0.47
FOXN3-215ENST00000557261 SPDYE2Q495Y8 402 aa12.09□□□□□ -0.47
FOXN3-215ENST00000557261 PITPNM1O00562 1244 aa12.03□□□□□ -0.48
FOXN3-215ENST00000557261 DCAF8L2P0C7V8 631 aa12.02□□□□□ -0.49
FOXN3-215ENST00000557261 SPDYE4A6NLX3 237 aa11.99□□□□□ -0.49
FOXN3-215ENST00000557261 VASPP50552 380 aaPredicted RBP11.98□□□□□ -0.49
FOXN3-215ENST00000557261 FBXO3Q9UK99 471 aa11.98□□□□□ -0.49
FOXN3-215ENST00000557261 IFNLR1Q8IU57 520 aaPredicted RBP11.97□□□□□ -0.49
FOXN3-215ENST00000557261 TAOK2Q9UL54 1235 aa11.97□□□□□ -0.49
FOXN3-215ENST00000557261 PIP4P2Q8N4L2 257 aa11.95□□□□□ -0.5
FOXN3-215ENST00000557261 ZNF692Q9BU19 519 aaPredicted RBP11.95□□□□□ -0.5
FOXN3-215ENST00000557261 SSUH2Q9Y2M2 353 aa11.95□□□□□ -0.5
FOXN3-215ENST00000557261 CCDC180Q9P1Z9 1646 aa11.94□□□□□ -0.5
FOXN3-215ENST00000557261 BCANQ96GW7 911 aa11.94□□□□□ -0.5
FOXN3-215ENST00000557261 PKD2Q13563 968 aa11.92□□□□□ -0.5
FOXN3-215ENST00000557261 PROM2Q8N271 834 aa11.91□□□□□ -0.5
FOXN3-215ENST00000557261 FXR2P51116 673 aaKnown RBP eCLIP11.87□□□□□ -0.51
FOXN3-215ENST00000557261 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
FOXN3-215ENST00000557261 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
FOXN3-215ENST00000557261 CLEC11AQ9Y240 323 aa11.85□□□□□ -0.51
FOXN3-215ENST00000557261 VSIG10Q8N0Z9 540 aa11.84□□□□□ -0.51
FOXN3-215ENST00000557261 TPRNQ4KMQ1 711 aa11.82□□□□□ -0.52
FOXN3-215ENST00000557261 PABPN1Q86U42 306 aaKnown RBP eCLIP11.8□□□□□ -0.52
FOXN3-215ENST00000557261 NPM1P06748 294 aaKnown RBP eCLIP11.77□□□□□ -0.53
FOXN3-215ENST00000557261 PRKAR2AP13861 404 aaKnown RBP11.71□□□□□ -0.53
FOXN3-215ENST00000557261 HAX1O00165 279 aa11.69□□□□□ -0.54
FOXN3-215ENST00000557261 PAXIP1Q6ZW49 1069 aaPredicted RBP11.69□□□□□ -0.54
FOXN3-215ENST00000557261 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
FOXN3-215ENST00000557261 CFAP44Q96MT7 982 aa11.67□□□□□ -0.54
FOXN3-215ENST00000557261 BBXQ8WY36 941 aaPredicted RBP11.65□□□□□ -0.54
FOXN3-215ENST00000557261 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
FOXN3-215ENST00000557261 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
FOXN3-215ENST00000557261 TSHZ2Q9NRE2 1034 aa11.61□□□□□ -0.55
FOXN3-215ENST00000557261 ECM2O94769 699 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms