RNA–Protein interactions for RNA: ENST00000556810.5

TMEM260-212, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 662 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-212ENST00000556810 AEBP2Q6ZN18 517 aaPredicted RBP25.92■■□□□ 1.74
TMEM260-212ENST00000556810 CHIC1Q5VXU3 224 aa24.88■■□□□ 1.57
TMEM260-212ENST00000556810 SENP3Q9H4L4 574 aaPredicted RBP22.1■■□□□ 1.13
TMEM260-212ENST00000556810 PHF23Q9BUL5 403 aaPredicted RBP21.83■■□□□ 1.09
TMEM260-212ENST00000556810 FOXD1Q16676 465 aa20.55■□□□□ 0.88
TMEM260-212ENST00000556810 PLPPR3Q6T4P5 718 aa20■□□□□ 0.79
TMEM260-212ENST00000556810 PPP6R1Q9UPN7 881 aa19.4■□□□□ 0.7
TMEM260-212ENST00000556810 ADRA2BP18089 450 aa19.37■□□□□ 0.69
TMEM260-212ENST00000556810 PIAS4Q8N2W9 510 aaPredicted RBP19.28■□□□□ 0.68
TMEM260-212ENST00000556810 MSH5O43196 834 aa19.15■□□□□ 0.66
TMEM260-212ENST00000556810 POTEDQ86YR6 584 aa18.24■□□□□ 0.51
TMEM260-212ENST00000556810 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
TMEM260-212ENST00000556810 MAPK8IP2Q13387 824 aaPredicted RBP17.7■□□□□ 0.42
TMEM260-212ENST00000556810 PPP4R3CPQ6ZMV5 832 aa17.56■□□□□ 0.4
TMEM260-212ENST00000556810 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
TMEM260-212ENST00000556810 CNKSR2Q8WXI2 1034 aa17.18■□□□□ 0.34
TMEM260-212ENST00000556810 HOXD11P31277 338 aaPredicted RBP17■□□□□ 0.31
TMEM260-212ENST00000556810 NCBP3Q53F19 620 aaKnown RBP16.97■□□□□ 0.31
TMEM260-212ENST00000556810 RNF216Q9NWF9 866 aaPredicted RBP16.95■□□□□ 0.3
TMEM260-212ENST00000556810 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
TMEM260-212ENST00000556810 NPM3O75607 178 aaKnown RBP16.72■□□□□ 0.27
TMEM260-212ENST00000556810 KCNA4P22459 653 aa16.63■□□□□ 0.25
TMEM260-212ENST00000556810 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
TMEM260-212ENST00000556810 RNF39Q9H2S5 420 aa16.35■□□□□ 0.21
TMEM260-212ENST00000556810 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
TMEM260-212ENST00000556810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.22■□□□□ 0.19
TMEM260-212ENST00000556810 C1QBPQ07021 282 aaKnown RBP16.13■□□□□ 0.17
TMEM260-212ENST00000556810 SLC4A2P04920 1241 aa15.9■□□□□ 0.14
TMEM260-212ENST00000556810 U3KPZ7 1027 aaPredicted RBP15.9■□□□□ 0.14
TMEM260-212ENST00000556810 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
TMEM260-212ENST00000556810 SPINK5Q9NQ38 1064 aaPredicted RBP15.58■□□□□ 0.08
TMEM260-212ENST00000556810 CAPN15O75808 1086 aa15.56■□□□□ 0.08
TMEM260-212ENST00000556810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
TMEM260-212ENST00000556810 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
TMEM260-212ENST00000556810 APLP2Q06481 763 aa15.5■□□□□ 0.07
TMEM260-212ENST00000556810 MYCNP04198 464 aaPredicted RBP15.47■□□□□ 0.07
TMEM260-212ENST00000556810 SAMD1Q6SPF0 538 aaPredicted RBP15.47■□□□□ 0.07
TMEM260-212ENST00000556810 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
TMEM260-212ENST00000556810 DSG3P32926 999 aa15.4■□□□□ 0.06
TMEM260-212ENST00000556810 TRHP20396 242 aaPredicted RBP15.37■□□□□ 0.05
TMEM260-212ENST00000556810 ZNF219Q9P2Y4 722 aaPredicted RBP15.36■□□□□ 0.05
TMEM260-212ENST00000556810 ZBTB22O15209 634 aa15.28■□□□□ 0.04
TMEM260-212ENST00000556810 ABCB7O75027 752 aa15.22■□□□□ 0.03
TMEM260-212ENST00000556810 ATF5Q9Y2D1 282 aaPredicted RBP15.07■□□□□ 0
TMEM260-212ENST00000556810 POLA2Q14181 598 aa15□□□□□ -0.01
TMEM260-212ENST00000556810 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
TMEM260-212ENST00000556810 CSRNP3Q8WYN3 585 aa14.81□□□□□ -0.04
TMEM260-212ENST00000556810 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
TMEM260-212ENST00000556810 ZBTB12Q9Y330 459 aaPredicted RBP14.74□□□□□ -0.05
TMEM260-212ENST00000556810 RBM42Q9BTD8 480 aaKnown RBP14.7□□□□□ -0.06
TMEM260-212ENST00000556810 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
TMEM260-212ENST00000556810 FBLN2P98095 1184 aa14.5□□□□□ -0.09
TMEM260-212ENST00000556810 AKT1S1Q96B36 256 aa14.42□□□□□ -0.1
TMEM260-212ENST00000556810 MKRN4PQ13434 485 aaPredicted RBP14.4□□□□□ -0.1
TMEM260-212ENST00000556810 POTEHQ6S545 545 aa14.35□□□□□ -0.11
TMEM260-212ENST00000556810 SPDYE2BA6NHP3 402 aa14.3□□□□□ -0.12
TMEM260-212ENST00000556810 SPDYE6P0CI01 402 aa14.3□□□□□ -0.12
TMEM260-212ENST00000556810 SPDYE2Q495Y8 402 aa14.3□□□□□ -0.12
TMEM260-212ENST00000556810 CHRDL2Q6WN34 429 aa14.27□□□□□ -0.13
TMEM260-212ENST00000556810 REM2Q8IYK8 340 aaPredicted RBP14.27□□□□□ -0.13
TMEM260-212ENST00000556810 ZNF692Q9BU19 519 aaPredicted RBP14.17□□□□□ -0.14
TMEM260-212ENST00000556810 SSUH2Q9Y2M2 353 aa14.13□□□□□ -0.15
TMEM260-212ENST00000556810 PITPNM1O00562 1244 aa14.12□□□□□ -0.15
TMEM260-212ENST00000556810 SPDYE1Q8NFV5 336 aaPredicted RBP14□□□□□ -0.17
TMEM260-212ENST00000556810 PIP4P2Q8N4L2 257 aa13.98□□□□□ -0.17
TMEM260-212ENST00000556810 PABPN1Q86U42 306 aaKnown RBP eCLIP13.97□□□□□ -0.17
TMEM260-212ENST00000556810 CLEC11AQ9Y240 323 aa13.95□□□□□ -0.18
TMEM260-212ENST00000556810 FXR2P51116 673 aaKnown RBP eCLIP13.94□□□□□ -0.18
TMEM260-212ENST00000556810 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
TMEM260-212ENST00000556810 PRR29P0C7W0 189 aa13.76□□□□□ -0.21
TMEM260-212ENST00000556810 PRKAR2AP13861 404 aaKnown RBP13.76□□□□□ -0.21
TMEM260-212ENST00000556810 HAX1O00165 279 aa13.66□□□□□ -0.22
TMEM260-212ENST00000556810 CHADLQ6NUI6 762 aa13.65□□□□□ -0.22
TMEM260-212ENST00000556810 STAG3Q9UJ98 1225 aa13.65□□□□□ -0.22
TMEM260-212ENST00000556810 SP7Q8TDD2 431 aaPredicted RBP13.57□□□□□ -0.24
TMEM260-212ENST00000556810 PROM2Q8N271 834 aa13.56□□□□□ -0.24
TMEM260-212ENST00000556810 C19orf67A6NJJ6 358 aa13.49□□□□□ -0.25
TMEM260-212ENST00000556810 EVX2Q03828 476 aa13.49□□□□□ -0.25
TMEM260-212ENST00000556810 FARP1Q9Y4F1 1045 aaPredicted RBP13.48□□□□□ -0.25
TMEM260-212ENST00000556810 CREBZFQ9NS37 354 aa13.47□□□□□ -0.25
TMEM260-212ENST00000556810 FKBP8Q14318 412 aa13.43□□□□□ -0.26
TMEM260-212ENST00000556810 CD44P16070 742 aaKnown RBP13.34□□□□□ -0.27
TMEM260-212ENST00000556810 MNX1P50219 401 aaPredicted RBP13.26□□□□□ -0.29
TMEM260-212ENST00000556810 NPM1P06748 294 aaKnown RBP eCLIP13.25□□□□□ -0.29
TMEM260-212ENST00000556810 GABBR2O75899 941 aa13.22□□□□□ -0.29
TMEM260-212ENST00000556810 MIER1Q8N108 512 aa13.19□□□□□ -0.3
TMEM260-212ENST00000556810 ZRANB1Q9UGI0 708 aa13.19□□□□□ -0.3
TMEM260-212ENST00000556810 PLEKHG5O94827 1062 aa13.18□□□□□ -0.3
TMEM260-212ENST00000556810 NISCHQ9Y2I1 1504 aa13.15□□□□□ -0.3
TMEM260-212ENST00000556810 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
TMEM260-212ENST00000556810 ZNF579Q8NAF0 562 aaKnown RBP13.15□□□□□ -0.3
TMEM260-212ENST00000556810 PLCD3Q8N3E9 789 aa13.13□□□□□ -0.31
TMEM260-212ENST00000556810 CLCN6P51797 869 aa13.12□□□□□ -0.31
TMEM260-212ENST00000556810 FBXO3Q9UK99 471 aa13.09□□□□□ -0.31
TMEM260-212ENST00000556810 PHF12Q96QT6 1004 aa13.03□□□□□ -0.32
TMEM260-212ENST00000556810 ZBTB47Q9UFB7 747 aaPredicted RBP13.02□□□□□ -0.33
TMEM260-212ENST00000556810 TSPYL2Q9H2G4 693 aaPredicted RBP13.01□□□□□ -0.33
TMEM260-212ENST00000556810 GALR2O43603 387 aaPredicted RBP12.97□□□□□ -0.33
TMEM260-212ENST00000556810 RASEFQ8IZ41 740 aa12.95□□□□□ -0.34
TMEM260-212ENST00000556810 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms