RNA–Protein interactions for RNA: ENST00000556782.5

PRPF39-211, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 645 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-211ENST00000556782 AEBP2Q6ZN18 517 aaPredicted RBP25.16■■□□□ 1.62
PRPF39-211ENST00000556782 CHIC1Q5VXU3 224 aa23.63■■□□□ 1.37
PRPF39-211ENST00000556782 SENP3Q9H4L4 574 aaPredicted RBP21.58■■□□□ 1.05
PRPF39-211ENST00000556782 PHF23Q9BUL5 403 aaPredicted RBP21.25■□□□□ 0.99
PRPF39-211ENST00000556782 FOXD1Q16676 465 aa20.11■□□□□ 0.81
PRPF39-211ENST00000556782 POTEDQ86YR6 584 aa19.02■□□□□ 0.64
PRPF39-211ENST00000556782 MSH5O43196 834 aa18.99■□□□□ 0.63
PRPF39-211ENST00000556782 PLPPR3Q6T4P5 718 aa18.78■□□□□ 0.6
PRPF39-211ENST00000556782 PIAS4Q8N2W9 510 aaPredicted RBP18.75■□□□□ 0.59
PRPF39-211ENST00000556782 PPP6R1Q9UPN7 881 aa18.56■□□□□ 0.56
PRPF39-211ENST00000556782 ADRA2BP18089 450 aa18.49■□□□□ 0.55
PRPF39-211ENST00000556782 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
PRPF39-211ENST00000556782 DMRT2Q9Y5R5 561 aa17.05■□□□□ 0.32
PRPF39-211ENST00000556782 SCAF1Q9H7N4 1312 aaKnown RBP17■□□□□ 0.31
PRPF39-211ENST00000556782 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
PRPF39-211ENST00000556782 DCAF8L1A6NGE4 600 aa16.41■□□□□ 0.22
PRPF39-211ENST00000556782 PPP4R3CPQ6ZMV5 832 aa16.4■□□□□ 0.22
PRPF39-211ENST00000556782 HOXD11P31277 338 aaPredicted RBP16.29■□□□□ 0.2
PRPF39-211ENST00000556782 CNKSR2Q8WXI2 1034 aa16.18■□□□□ 0.18
PRPF39-211ENST00000556782 RNF39Q9H2S5 420 aa16.14■□□□□ 0.17
PRPF39-211ENST00000556782 RNF216Q9NWF9 866 aaPredicted RBP16.11■□□□□ 0.17
PRPF39-211ENST00000556782 C1QBPQ07021 282 aaKnown RBP15.92■□□□□ 0.14
PRPF39-211ENST00000556782 DNAJC5BQ9UF47 199 aa15.82■□□□□ 0.12
PRPF39-211ENST00000556782 NCBP3Q53F19 620 aaKnown RBP15.72■□□□□ 0.11
PRPF39-211ENST00000556782 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.57■□□□□ 0.08
PRPF39-211ENST00000556782 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
PRPF39-211ENST00000556782 U3KPZ7 1027 aaPredicted RBP15.15■□□□□ 0.02
PRPF39-211ENST00000556782 CAPN15O75808 1086 aa15.06■□□□□ 0
PRPF39-211ENST00000556782 SPINK5Q9NQ38 1064 aaPredicted RBP15.03■□□□□ -0
PRPF39-211ENST00000556782 DSG3P32926 999 aa15.02■□□□□ -0
PRPF39-211ENST00000556782 POTEHQ6S545 545 aa14.87□□□□□ -0.03
PRPF39-211ENST00000556782 KCNA4P22459 653 aa14.86□□□□□ -0.03
PRPF39-211ENST00000556782 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
PRPF39-211ENST00000556782 APLP2Q06481 763 aa14.79□□□□□ -0.04
PRPF39-211ENST00000556782 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
PRPF39-211ENST00000556782 ZNF219Q9P2Y4 722 aaPredicted RBP14.71□□□□□ -0.05
PRPF39-211ENST00000556782 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.69□□□□□ -0.06
PRPF39-211ENST00000556782 HNRNPUL2Q1KMD3 747 aaKnown RBP14.69□□□□□ -0.06
PRPF39-211ENST00000556782 ABCB7O75027 752 aa14.65□□□□□ -0.06
PRPF39-211ENST00000556782 SAMD1Q6SPF0 538 aaPredicted RBP14.57□□□□□ -0.08
PRPF39-211ENST00000556782 RBM42Q9BTD8 480 aaKnown RBP14.38□□□□□ -0.11
PRPF39-211ENST00000556782 MYCNP04198 464 aaPredicted RBP14.31□□□□□ -0.12
PRPF39-211ENST00000556782 POLA2Q14181 598 aa14.27□□□□□ -0.13
PRPF39-211ENST00000556782 CHRDL2Q6WN34 429 aa14.16□□□□□ -0.14
PRPF39-211ENST00000556782 SLC4A1APQ9BWU0 796 aaKnown RBP13.99□□□□□ -0.17
PRPF39-211ENST00000556782 FOXD4L1Q9NU39 408 aa13.99□□□□□ -0.17
PRPF39-211ENST00000556782 ZBTB12Q9Y330 459 aaPredicted RBP13.99□□□□□ -0.17
PRPF39-211ENST00000556782 AKT1S1Q96B36 256 aa13.97□□□□□ -0.17
PRPF39-211ENST00000556782 ATF5Q9Y2D1 282 aaPredicted RBP13.95□□□□□ -0.18
PRPF39-211ENST00000556782 REM2Q8IYK8 340 aaPredicted RBP13.83□□□□□ -0.2
PRPF39-211ENST00000556782 OSCARQ8IYS5 282 aa13.8□□□□□ -0.2
PRPF39-211ENST00000556782 SP7Q8TDD2 431 aaPredicted RBP13.79□□□□□ -0.2
PRPF39-211ENST00000556782 PIP4P2Q8N4L2 257 aa13.74□□□□□ -0.21
PRPF39-211ENST00000556782 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
PRPF39-211ENST00000556782 HAX1O00165 279 aa13.62□□□□□ -0.23
PRPF39-211ENST00000556782 ZBTB22O15209 634 aa13.62□□□□□ -0.23
PRPF39-211ENST00000556782 FXR2P51116 673 aaKnown RBP eCLIP13.62□□□□□ -0.23
PRPF39-211ENST00000556782 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
PRPF39-211ENST00000556782 SPDYE2BA6NHP3 402 aa13.51□□□□□ -0.25
PRPF39-211ENST00000556782 SPDYE6P0CI01 402 aa13.51□□□□□ -0.25
PRPF39-211ENST00000556782 FBLN2P98095 1184 aa13.51□□□□□ -0.25
PRPF39-211ENST00000556782 SPDYE2Q495Y8 402 aa13.51□□□□□ -0.25
PRPF39-211ENST00000556782 EVX2Q03828 476 aa13.36□□□□□ -0.27
PRPF39-211ENST00000556782 SPDYE1Q8NFV5 336 aaPredicted RBP13.36□□□□□ -0.27
PRPF39-211ENST00000556782 CLEC11AQ9Y240 323 aa13.35□□□□□ -0.27
PRPF39-211ENST00000556782 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
PRPF39-211ENST00000556782 NISCHQ9Y2I1 1504 aa13.33□□□□□ -0.28
PRPF39-211ENST00000556782 ZNF692Q9BU19 519 aaPredicted RBP13.31□□□□□ -0.28
PRPF39-211ENST00000556782 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
PRPF39-211ENST00000556782 SSUH2Q9Y2M2 353 aa13.26□□□□□ -0.29
PRPF39-211ENST00000556782 C19orf67A6NJJ6 358 aa13.19□□□□□ -0.3
PRPF39-211ENST00000556782 PRR29P0C7W0 189 aa13.1□□□□□ -0.31
PRPF39-211ENST00000556782 CHADLQ6NUI6 762 aa13.09□□□□□ -0.31
PRPF39-211ENST00000556782 PABPN1Q86U42 306 aaKnown RBP eCLIP13.09□□□□□ -0.31
PRPF39-211ENST00000556782 GABBR2O75899 941 aa13.08□□□□□ -0.32
PRPF39-211ENST00000556782 LHX8Q68G74 356 aa12.94□□□□□ -0.34
PRPF39-211ENST00000556782 CD44P16070 742 aaKnown RBP12.89□□□□□ -0.35
PRPF39-211ENST00000556782 FARP1Q9Y4F1 1045 aaPredicted RBP12.89□□□□□ -0.35
PRPF39-211ENST00000556782 CLCN6P51797 869 aa12.82□□□□□ -0.36
PRPF39-211ENST00000556782 POTEIP0CG38 1075 aa12.76□□□□□ -0.37
PRPF39-211ENST00000556782 CSRNP3Q8WYN3 585 aa12.75□□□□□ -0.37
PRPF39-211ENST00000556782 DCBLD2Q96PD2 775 aa12.71□□□□□ -0.37
PRPF39-211ENST00000556782 STAG3Q9UJ98 1225 aa12.7□□□□□ -0.38
PRPF39-211ENST00000556782 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
PRPF39-211ENST00000556782 ZNF579Q8NAF0 562 aaKnown RBP12.66□□□□□ -0.38
PRPF39-211ENST00000556782 CREBZFQ9NS37 354 aa12.65□□□□□ -0.38
PRPF39-211ENST00000556782 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
PRPF39-211ENST00000556782 PAK3O75914 559 aaPredicted RBP12.54□□□□□ -0.4
PRPF39-211ENST00000556782 EHMT2Q96KQ7 1210 aa12.54□□□□□ -0.4
PRPF39-211ENST00000556782 GALR2O43603 387 aaPredicted RBP12.52□□□□□ -0.41
PRPF39-211ENST00000556782 NPM1P06748 294 aaKnown RBP eCLIP12.47□□□□□ -0.41
PRPF39-211ENST00000556782 PHF12Q96QT6 1004 aa12.44□□□□□ -0.42
PRPF39-211ENST00000556782 MNX1P50219 401 aaPredicted RBP12.37□□□□□ -0.43
PRPF39-211ENST00000556782 OTUD5Q96G74 571 aa12.37□□□□□ -0.43
PRPF39-211ENST00000556782 PLSCR2Q9NRY7 297 aa12.37□□□□□ -0.43
PRPF39-211ENST00000556782 POTEB2H3BUK9 544 aa12.34□□□□□ -0.43
PRPF39-211ENST00000556782 PELP1Q8IZL8 1130 aaKnown RBP12.3□□□□□ -0.44
PRPF39-211ENST00000556782 MS4A3Q96HJ5 214 aa12.26□□□□□ -0.45
PRPF39-211ENST00000556782 ASTLQ6HA08 431 aaPredicted RBP12.24□□□□□ -0.45
PRPF39-211ENST00000556782 METRNQ9UJH8 293 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms