RNA–Protein interactions for RNA: ENST00000556237.1

HIF1A-208, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 4

Gene HIF1A, Length 595 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-208ENST00000556237 AEBP2Q6ZN18 517 aaPredicted RBP25.24■■□□□ 1.63
HIF1A-208ENST00000556237 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
HIF1A-208ENST00000556237 SENP3Q9H4L4 574 aaPredicted RBP21.6■■□□□ 1.05
HIF1A-208ENST00000556237 PHF23Q9BUL5 403 aaPredicted RBP21.27■■□□□ 1
HIF1A-208ENST00000556237 FOXD1Q16676 465 aa20.11■□□□□ 0.81
HIF1A-208ENST00000556237 PLPPR3Q6T4P5 718 aa19.06■□□□□ 0.64
HIF1A-208ENST00000556237 MSH5O43196 834 aa18.91■□□□□ 0.62
HIF1A-208ENST00000556237 PIAS4Q8N2W9 510 aaPredicted RBP18.79■□□□□ 0.6
HIF1A-208ENST00000556237 PPP6R1Q9UPN7 881 aa18.69■□□□□ 0.58
HIF1A-208ENST00000556237 ADRA2BP18089 450 aa18.64■□□□□ 0.57
HIF1A-208ENST00000556237 POTEDQ86YR6 584 aa18.61■□□□□ 0.57
HIF1A-208ENST00000556237 MAPK8IP2Q13387 824 aaPredicted RBP17.14■□□□□ 0.33
HIF1A-208ENST00000556237 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
HIF1A-208ENST00000556237 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
HIF1A-208ENST00000556237 PPP4R3CPQ6ZMV5 832 aa16.67■□□□□ 0.26
HIF1A-208ENST00000556237 HOXD11P31277 338 aaPredicted RBP16.42■□□□□ 0.22
HIF1A-208ENST00000556237 DCAF8L1A6NGE4 600 aa16.41■□□□□ 0.22
HIF1A-208ENST00000556237 CNKSR2Q8WXI2 1034 aa16.4■□□□□ 0.22
HIF1A-208ENST00000556237 RNF216Q9NWF9 866 aaPredicted RBP16.28■□□□□ 0.2
HIF1A-208ENST00000556237 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
HIF1A-208ENST00000556237 RNF39Q9H2S5 420 aa16.1■□□□□ 0.17
HIF1A-208ENST00000556237 NCBP3Q53F19 620 aaKnown RBP16.03■□□□□ 0.16
HIF1A-208ENST00000556237 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
HIF1A-208ENST00000556237 C1QBPQ07021 282 aaKnown RBP15.88■□□□□ 0.13
HIF1A-208ENST00000556237 NPM3O75607 178 aaKnown RBP15.77■□□□□ 0.12
HIF1A-208ENST00000556237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.11e-8■■□□□ 12.5
HIF1A-208ENST00000556237 KCNA4P22459 653 aa15.35■□□□□ 0.05
HIF1A-208ENST00000556237 U3KPZ7 1027 aaPredicted RBP15.3■□□□□ 0.04
HIF1A-208ENST00000556237 CAPN15O75808 1086 aa15.11■□□□□ 0.01
HIF1A-208ENST00000556237 SPINK5Q9NQ38 1064 aaPredicted RBP15.1■□□□□ 0.01
HIF1A-208ENST00000556237 SLC4A2P04920 1241 aa15.07■□□□□ 0
HIF1A-208ENST00000556237 DSG3P32926 999 aa15.03■□□□□ -0
HIF1A-208ENST00000556237 APLP2Q06481 763 aa14.92□□□□□ -0.02
HIF1A-208ENST00000556237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.88□□□□□ -0.03
HIF1A-208ENST00000556237 HNRNPUL2Q1KMD3 747 aaKnown RBP14.88□□□□□ -0.03
HIF1A-208ENST00000556237 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
HIF1A-208ENST00000556237 ZNF219Q9P2Y4 722 aaPredicted RBP14.83□□□□□ -0.04
HIF1A-208ENST00000556237 SAMD1Q6SPF0 538 aaPredicted RBP14.78□□□□□ -0.04
HIF1A-208ENST00000556237 ABCB7O75027 752 aa14.73□□□□□ -0.05
HIF1A-208ENST00000556237 MYCNP04198 464 aaPredicted RBP14.61□□□□□ -0.07
HIF1A-208ENST00000556237 POTEHQ6S545 545 aa14.57□□□□□ -0.08
HIF1A-208ENST00000556237 SLC4A1APQ9BWU0 796 aaKnown RBP14.49□□□□□ -0.09
HIF1A-208ENST00000556237 POLA2Q14181 598 aa14.4□□□□□ -0.1
HIF1A-208ENST00000556237 RBM42Q9BTD8 480 aaKnown RBP14.39□□□□□ -0.11
HIF1A-208ENST00000556237 FOXD4L1Q9NU39 408 aa14.39□□□□□ -0.11
HIF1A-208ENST00000556237 NISCHQ9Y2I1 1504 aa14.27□□□□□ -0.12
HIF1A-208ENST00000556237 ATF5Q9Y2D1 282 aaPredicted RBP14.23□□□□□ -0.13
HIF1A-208ENST00000556237 ZBTB12Q9Y330 459 aaPredicted RBP14.15□□□□□ -0.14
HIF1A-208ENST00000556237 ZBTB22O15209 634 aa14.1□□□□□ -0.15
HIF1A-208ENST00000556237 CHRDL2Q6WN34 429 aa14.09□□□□□ -0.15
HIF1A-208ENST00000556237 AKT1S1Q96B36 256 aa14.02□□□□□ -0.17
HIF1A-208ENST00000556237 ATXN8OSP0DMR3 200 aa13.97□□□□□ -0.17
HIF1A-208ENST00000556237 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
HIF1A-208ENST00000556237 REM2Q8IYK8 340 aaPredicted RBP13.87□□□□□ -0.19
HIF1A-208ENST00000556237 FBLN2P98095 1184 aa13.75□□□□□ -0.21
HIF1A-208ENST00000556237 PITPNM1O00562 1244 aa13.72□□□□□ -0.21
HIF1A-208ENST00000556237 PIP4P2Q8N4L2 257 aa13.72□□□□□ -0.21
HIF1A-208ENST00000556237 SPDYE2BA6NHP3 402 aa13.68□□□□□ -0.22
HIF1A-208ENST00000556237 SPDYE6P0CI01 402 aa13.68□□□□□ -0.22
HIF1A-208ENST00000556237 SPDYE2Q495Y8 402 aa13.68□□□□□ -0.22
HIF1A-208ENST00000556237 FXR2P51116 673 aaKnown RBP eCLIP13.63□□□□□ -0.23
HIF1A-208ENST00000556237 SP7Q8TDD2 431 aaPredicted RBP13.62□□□□□ -0.23
HIF1A-208ENST00000556237 MKRN4PQ13434 485 aaPredicted RBP13.58□□□□□ -0.24
HIF1A-208ENST00000556237 EHMT2Q96KQ7 1210 aa13.53□□□□□ -0.24
HIF1A-208ENST00000556237 HAX1O00165 279 aa13.51□□□□□ -0.25
HIF1A-208ENST00000556237 ZNF692Q9BU19 519 aaPredicted RBP13.49□□□□□ -0.25
HIF1A-208ENST00000556237 SPDYE1Q8NFV5 336 aaPredicted RBP13.48□□□□□ -0.25
HIF1A-208ENST00000556237 SSUH2Q9Y2M2 353 aa13.48□□□□□ -0.25
HIF1A-208ENST00000556237 CSRNP3Q8WYN3 585 aa13.45□□□□□ -0.26
HIF1A-208ENST00000556237 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
HIF1A-208ENST00000556237 PRKAR2AP13861 404 aaKnown RBP13.37□□□□□ -0.27
HIF1A-208ENST00000556237 EVX2Q03828 476 aa13.29□□□□□ -0.28
HIF1A-208ENST00000556237 PABPN1Q86U42 306 aaKnown RBP eCLIP13.28□□□□□ -0.28
HIF1A-208ENST00000556237 PRR29P0C7W0 189 aa13.21□□□□□ -0.29
HIF1A-208ENST00000556237 C19orf67A6NJJ6 358 aa13.19□□□□□ -0.3
HIF1A-208ENST00000556237 CHADLQ6NUI6 762 aa13.18□□□□□ -0.3
HIF1A-208ENST00000556237 GABBR2O75899 941 aa13.02□□□□□ -0.33
HIF1A-208ENST00000556237 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
HIF1A-208ENST00000556237 CD44P16070 742 aaKnown RBP12.95□□□□□ -0.34
HIF1A-208ENST00000556237 STAG3Q9UJ98 1225 aa12.93□□□□□ -0.34
HIF1A-208ENST00000556237 SPDYE4A6NLX3 237 aa12.91□□□□□ -0.34
HIF1A-208ENST00000556237 CREBZFQ9NS37 354 aa12.84□□□□□ -0.35
HIF1A-208ENST00000556237 CLCN6P51797 869 aa12.83□□□□□ -0.36
HIF1A-208ENST00000556237 LHX8Q68G74 356 aa12.76□□□□□ -0.37
HIF1A-208ENST00000556237 ZNF579Q8NAF0 562 aaKnown RBP12.75□□□□□ -0.37
HIF1A-208ENST00000556237 ZRANB1Q9UGI0 708 aa12.74□□□□□ -0.37
HIF1A-208ENST00000556237 POTEIP0CG38 1075 aa12.72□□□□□ -0.37
HIF1A-208ENST00000556237 DCBLD2Q96PD2 775 aa12.67□□□□□ -0.38
HIF1A-208ENST00000556237 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
HIF1A-208ENST00000556237 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
HIF1A-208ENST00000556237 MNX1P50219 401 aaPredicted RBP12.59□□□□□ -0.39
HIF1A-208ENST00000556237 GALR2O43603 387 aaPredicted RBP12.58□□□□□ -0.4
HIF1A-208ENST00000556237 PROM2Q8N271 834 aa12.57□□□□□ -0.4
HIF1A-208ENST00000556237 PHF12Q96QT6 1004 aa12.54□□□□□ -0.4
HIF1A-208ENST00000556237 CCDC180Q9P1Z9 1646 aa12.4□□□□□ -0.42
HIF1A-208ENST00000556237 MS4A3Q96HJ5 214 aa12.38□□□□□ -0.43
HIF1A-208ENST00000556237 PLEKHG5O94827 1062 aa12.37□□□□□ -0.43
HIF1A-208ENST00000556237 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
HIF1A-208ENST00000556237 PELP1Q8IZL8 1130 aaKnown RBP12.33□□□□□ -0.44
HIF1A-208ENST00000556237 MIER1Q8N108 512 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms