RNA–Protein interactions for RNA: ENST00000552295.5

BEST3-211, Transcript of bestrophin 3, humanhuman

TSL 5

Gene BEST3, Length 720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-211ENST00000552295 AEBP2Q6ZN18 517 aaPredicted RBP33.33■■■□□ 2.93
BEST3-211ENST00000552295 CHIC1Q5VXU3 224 aa31.7■■■□□ 2.67
BEST3-211ENST00000552295 SENP3Q9H4L4 574 aaPredicted RBP28.49■■■□□ 2.15
BEST3-211ENST00000552295 PHF23Q9BUL5 403 aaPredicted RBP28.11■■■□□ 2.09
BEST3-211ENST00000552295 FOXD1Q16676 465 aa26.52■■□□□ 1.84
BEST3-211ENST00000552295 PLPPR3Q6T4P5 718 aa25.36■■□□□ 1.65
BEST3-211ENST00000552295 MSH5O43196 834 aa24.86■■□□□ 1.57
BEST3-211ENST00000552295 PIAS4Q8N2W9 510 aaPredicted RBP24.82■■□□□ 1.56
BEST3-211ENST00000552295 PPP6R1Q9UPN7 881 aa24.77■■□□□ 1.56
BEST3-211ENST00000552295 ADRA2BP18089 450 aa24.72■■□□□ 1.55
BEST3-211ENST00000552295 POTEDQ86YR6 584 aa24.21■■□□□ 1.47
BEST3-211ENST00000552295 MAPK8IP2Q13387 824 aaPredicted RBP22.7■■□□□ 1.22
BEST3-211ENST00000552295 SCAF1Q9H7N4 1312 aaKnown RBP22.69■■□□□ 1.22
BEST3-211ENST00000552295 DMRT2Q9Y5R5 561 aa22.58■■□□□ 1.21
BEST3-211ENST00000552295 PPP4R3CPQ6ZMV5 832 aa22.22■■□□□ 1.15
BEST3-211ENST00000552295 CNKSR2Q8WXI2 1034 aa21.81■■□□□ 1.08
BEST3-211ENST00000552295 HOXD11P31277 338 aaPredicted RBP21.75■■□□□ 1.07
BEST3-211ENST00000552295 DCAF8L1A6NGE4 600 aa21.69■■□□□ 1.06
BEST3-211ENST00000552295 RNF216Q9NWF9 866 aaPredicted RBP21.61■■□□□ 1.05
BEST3-211ENST00000552295 NCBP3Q53F19 620 aaKnown RBP21.41■■□□□ 1.02
BEST3-211ENST00000552295 CACNB1Q02641 598 aaPredicted RBP21.33■■□□□ 1.01
BEST3-211ENST00000552295 RNF39Q9H2S5 420 aa21.18■□□□□ 0.98
BEST3-211ENST00000552295 NPM3O75607 178 aaKnown RBP21.04■□□□□ 0.96
BEST3-211ENST00000552295 DNAJC5BQ9UF47 199 aa21.01■□□□□ 0.95
BEST3-211ENST00000552295 C1QBPQ07021 282 aaKnown RBP20.9■□□□□ 0.94
BEST3-211ENST00000552295 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.76■□□□□ 0.91
BEST3-211ENST00000552295 KCNA4P22459 653 aa20.65■□□□□ 0.9
BEST3-211ENST00000552295 U3KPZ7 1027 aaPredicted RBP20.29■□□□□ 0.84
BEST3-211ENST00000552295 SLC4A2P04920 1241 aa20.08■□□□□ 0.81
BEST3-211ENST00000552295 CAPN15O75808 1086 aa19.99■□□□□ 0.79
BEST3-211ENST00000552295 SPINK5Q9NQ38 1064 aaPredicted RBP19.98■□□□□ 0.79
BEST3-211ENST00000552295 DSG3P32926 999 aa19.84■□□□□ 0.77
BEST3-211ENST00000552295 APLP2Q06481 763 aa19.81■□□□□ 0.76
BEST3-211ENST00000552295 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.77■□□□□ 0.76
BEST3-211ENST00000552295 HNRNPUL2Q1KMD3 747 aaKnown RBP19.77■□□□□ 0.76
BEST3-211ENST00000552295 TRHP20396 242 aaPredicted RBP19.68■□□□□ 0.74
BEST3-211ENST00000552295 SAMD1Q6SPF0 538 aaPredicted RBP19.65■□□□□ 0.74
BEST3-211ENST00000552295 ZNF219Q9P2Y4 722 aaPredicted RBP19.65■□□□□ 0.74
BEST3-211ENST00000552295 SLC4A1APQ9BWU0 796 aaKnown RBP19.53■□□□□ 0.72
BEST3-211ENST00000552295 ABCB7O75027 752 aa19.51■□□□□ 0.71
BEST3-211ENST00000552295 MYCNP04198 464 aaPredicted RBP19.5■□□□□ 0.71
BEST3-211ENST00000552295 FOXD4L1Q9NU39 408 aa19.3■□□□□ 0.68
BEST3-211ENST00000552295 POLA2Q14181 598 aa19.13■□□□□ 0.65
BEST3-211ENST00000552295 POTEHQ6S545 545 aa18.99■□□□□ 0.63
BEST3-211ENST00000552295 RBM42Q9BTD8 480 aaKnown RBP18.99■□□□□ 0.63
BEST3-211ENST00000552295 ATF5Q9Y2D1 282 aaPredicted RBP18.99■□□□□ 0.63
BEST3-211ENST00000552295 ZBTB22O15209 634 aa18.95■□□□□ 0.62
BEST3-211ENST00000552295 NISCHQ9Y2I1 1504 aa18.83■□□□□ 0.6
BEST3-211ENST00000552295 ZBTB12Q9Y330 459 aaPredicted RBP18.79■□□□□ 0.6
BEST3-211ENST00000552295 ATXN8OSP0DMR3 200 aa18.7■□□□□ 0.58
BEST3-211ENST00000552295 CHRDL2Q6WN34 429 aa18.53■□□□□ 0.56
BEST3-211ENST00000552295 AKT1S1Q96B36 256 aa18.53■□□□□ 0.56
BEST3-211ENST00000552295 OSCARQ8IYS5 282 aa18.52■□□□□ 0.56
BEST3-211ENST00000552295 FBLN2P98095 1184 aa18.34■□□□□ 0.53
BEST3-211ENST00000552295 REM2Q8IYK8 340 aaPredicted RBP18.34■□□□□ 0.53
BEST3-211ENST00000552295 SPDYE2BA6NHP3 402 aa18.19■□□□□ 0.5
BEST3-211ENST00000552295 SPDYE6P0CI01 402 aa18.19■□□□□ 0.5
BEST3-211ENST00000552295 SPDYE2Q495Y8 402 aa18.19■□□□□ 0.5
BEST3-211ENST00000552295 PITPNM1O00562 1244 aa18.14■□□□□ 0.49
BEST3-211ENST00000552295 MKRN4PQ13434 485 aaPredicted RBP18.12■□□□□ 0.49
BEST3-211ENST00000552295 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
BEST3-211ENST00000552295 PIP4P2Q8N4L2 257 aa18.08■□□□□ 0.48
BEST3-211ENST00000552295 FXR2P51116 673 aaKnown RBP eCLIP17.97■□□□□ 0.47
BEST3-211ENST00000552295 ZNF692Q9BU19 519 aaPredicted RBP17.97■□□□□ 0.47
BEST3-211ENST00000552295 SSUH2Q9Y2M2 353 aa17.92■□□□□ 0.46
BEST3-211ENST00000552295 EHMT2Q96KQ7 1210 aa17.91■□□□□ 0.46
BEST3-211ENST00000552295 SPDYE1Q8NFV5 336 aaPredicted RBP17.88■□□□□ 0.45
BEST3-211ENST00000552295 CLEC11AQ9Y240 323 aa17.84■□□□□ 0.45
BEST3-211ENST00000552295 SP7Q8TDD2 431 aaPredicted RBP17.81■□□□□ 0.44
BEST3-211ENST00000552295 HAX1O00165 279 aa17.78■□□□□ 0.44
BEST3-211ENST00000552295 PABPN1Q86U42 306 aaKnown RBP eCLIP17.7■□□□□ 0.42
BEST3-211ENST00000552295 PRKAR2AP13861 404 aaKnown RBP17.68■□□□□ 0.42
BEST3-211ENST00000552295 PRR29P0C7W0 189 aa17.55■□□□□ 0.4
BEST3-211ENST00000552295 EVX2Q03828 476 aa17.49■□□□□ 0.39
BEST3-211ENST00000552295 CHADLQ6NUI6 762 aa17.47■□□□□ 0.39
BEST3-211ENST00000552295 C19orf67A6NJJ6 358 aa17.4■□□□□ 0.38
BEST3-211ENST00000552295 SPDYE4A6NLX3 237 aa17.32■□□□□ 0.36
BEST3-211ENST00000552295 STAG3Q9UJ98 1225 aa17.25■□□□□ 0.35
BEST3-211ENST00000552295 FARP1Q9Y4F1 1045 aaPredicted RBP17.23■□□□□ 0.35
BEST3-211ENST00000552295 GABBR2O75899 941 aa17.14■□□□□ 0.33
BEST3-211ENST00000552295 CD44P16070 742 aaKnown RBP17.13■□□□□ 0.33
BEST3-211ENST00000552295 CREBZFQ9NS37 354 aa17.08■□□□□ 0.32
BEST3-211ENST00000552295 CLCN6P51797 869 aa16.92■□□□□ 0.3
BEST3-211ENST00000552295 ZRANB1Q9UGI0 708 aa16.9■□□□□ 0.3
BEST3-211ENST00000552295 PROM2Q8N271 834 aa16.86■□□□□ 0.29
BEST3-211ENST00000552295 ZNF579Q8NAF0 562 aaKnown RBP16.86■□□□□ 0.29
BEST3-211ENST00000552295 NPM1P06748 294 aaKnown RBP eCLIP16.83■□□□□ 0.28
BEST3-211ENST00000552295 PAK3O75914 559 aaPredicted RBP16.8■□□□□ 0.28
BEST3-211ENST00000552295 MNX1P50219 401 aaPredicted RBP16.76■□□□□ 0.27
BEST3-211ENST00000552295 POTEIP0CG38 1075 aa16.75■□□□□ 0.27
BEST3-211ENST00000552295 DCBLD2Q96PD2 775 aa16.73■□□□□ 0.27
BEST3-211ENST00000552295 LHX8Q68G74 356 aa16.71■□□□□ 0.27
BEST3-211ENST00000552295 PHF12Q96QT6 1004 aa16.65■□□□□ 0.26
BEST3-211ENST00000552295 GALR2O43603 387 aaPredicted RBP16.64■□□□□ 0.25
BEST3-211ENST00000552295 CCDC180Q9P1Z9 1646 aa16.61■□□□□ 0.25
BEST3-211ENST00000552295 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
BEST3-211ENST00000552295 MIER1Q8N108 512 aa16.53■□□□□ 0.24
BEST3-211ENST00000552295 TSPYL2Q9H2G4 693 aaPredicted RBP16.49■□□□□ 0.23
BEST3-211ENST00000552295 FKBP8Q14318 412 aa16.46■□□□□ 0.23
BEST3-211ENST00000552295 PLCD3Q8N3E9 789 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms