RNA–Protein interactions for RNA: ENST00000537983.1

NPIPB3-208, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-208ENST00000537983 AEBP2Q6ZN18 517 aaPredicted RBP19.63■□□□□ 0.73
NPIPB3-208ENST00000537983 CHIC1Q5VXU3 224 aa19.37■□□□□ 0.69
NPIPB3-208ENST00000537983 PHF23Q9BUL5 403 aaPredicted RBP17.07■□□□□ 0.32
NPIPB3-208ENST00000537983 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
NPIPB3-208ENST00000537983 PLPPR3Q6T4P5 718 aa15.78■□□□□ 0.12
NPIPB3-208ENST00000537983 FOXD1Q16676 465 aa15.38■□□□□ 0.05
NPIPB3-208ENST00000537983 PPP6R1Q9UPN7 881 aa14.98□□□□□ -0.01
NPIPB3-208ENST00000537983 ADRA2BP18089 450 aa14.96□□□□□ -0.01
NPIPB3-208ENST00000537983 PIAS4Q8N2W9 510 aaPredicted RBP14.53□□□□□ -0.08
NPIPB3-208ENST00000537983 MSH5O43196 834 aa14.07□□□□□ -0.16
NPIPB3-208ENST00000537983 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
NPIPB3-208ENST00000537983 KCNA4P22459 653 aa13.88□□□□□ -0.19
NPIPB3-208ENST00000537983 SCAF1Q9H7N4 1312 aaKnown RBP13.63□□□□□ -0.23
NPIPB3-208ENST00000537983 NCBP3Q53F19 620 aaKnown RBP13.6□□□□□ -0.23
NPIPB3-208ENST00000537983 MAPK8IP2Q13387 824 aaPredicted RBP13.5□□□□□ -0.25
NPIPB3-208ENST00000537983 CNKSR2Q8WXI2 1034 aa13.5□□□□□ -0.25
NPIPB3-208ENST00000537983 NPM3O75607 178 aaKnown RBP13.46□□□□□ -0.25
NPIPB3-208ENST00000537983 DMRT2Q9Y5R5 561 aa13.3□□□□□ -0.28
NPIPB3-208ENST00000537983 SLC4A1APQ9BWU0 796 aaKnown RBP13.23□□□□□ -0.29
NPIPB3-208ENST00000537983 RNF216Q9NWF9 866 aaPredicted RBP13.19□□□□□ -0.3
NPIPB3-208ENST00000537983 HOXD11P31277 338 aaPredicted RBP13.11□□□□□ -0.31
NPIPB3-208ENST00000537983 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
NPIPB3-208ENST00000537983 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
NPIPB3-208ENST00000537983 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
NPIPB3-208ENST00000537983 ZBTB22O15209 634 aa12.81□□□□□ -0.36
NPIPB3-208ENST00000537983 FOXD4L1Q9NU39 408 aa12.71□□□□□ -0.37
NPIPB3-208ENST00000537983 SLC4A2P04920 1241 aa12.68□□□□□ -0.38
NPIPB3-208ENST00000537983 DCAF8L1A6NGE4 600 aa12.61□□□□□ -0.39
NPIPB3-208ENST00000537983 POTEDQ86YR6 584 aa12.46□□□□□ -0.41
NPIPB3-208ENST00000537983 MYCNP04198 464 aaPredicted RBP12.42□□□□□ -0.42
NPIPB3-208ENST00000537983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.42□□□□□ -0.42
NPIPB3-208ENST00000537983 NISCHQ9Y2I1 1504 aa12.33□□□□□ -0.44
NPIPB3-208ENST00000537983 U3KPZ7 1027 aaPredicted RBP12.32□□□□□ -0.44
NPIPB3-208ENST00000537983 ATXN8OSP0DMR3 200 aa12.25□□□□□ -0.45
NPIPB3-208ENST00000537983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.16□□□□□ -0.46
NPIPB3-208ENST00000537983 HNRNPUL2Q1KMD3 747 aaKnown RBP12.16□□□□□ -0.46
NPIPB3-208ENST00000537983 SAMD1Q6SPF0 538 aaPredicted RBP12.15□□□□□ -0.46
NPIPB3-208ENST00000537983 RNF39Q9H2S5 420 aa12.11□□□□□ -0.47
NPIPB3-208ENST00000537983 ATF5Q9Y2D1 282 aaPredicted RBP12.09□□□□□ -0.47
NPIPB3-208ENST00000537983 APLP2Q06481 763 aa11.99□□□□□ -0.49
NPIPB3-208ENST00000537983 C1QBPQ07021 282 aaKnown RBP11.95□□□□□ -0.5
NPIPB3-208ENST00000537983 SPINK5Q9NQ38 1064 aaPredicted RBP11.89□□□□□ -0.51
NPIPB3-208ENST00000537983 ZNF219Q9P2Y4 722 aaPredicted RBP11.85□□□□□ -0.51
NPIPB3-208ENST00000537983 CAPN15O75808 1086 aa11.78□□□□□ -0.52
NPIPB3-208ENST00000537983 TRHP20396 242 aaPredicted RBP11.78□□□□□ -0.52
NPIPB3-208ENST00000537983 POLA2Q14181 598 aa11.65□□□□□ -0.54
NPIPB3-208ENST00000537983 ABCB7O75027 752 aa11.6□□□□□ -0.55
NPIPB3-208ENST00000537983 MKRN4PQ13434 485 aaPredicted RBP11.6□□□□□ -0.55
NPIPB3-208ENST00000537983 DSG3P32926 999 aa11.59□□□□□ -0.55
NPIPB3-208ENST00000537983 FKBP8Q14318 412 aa11.59□□□□□ -0.55
NPIPB3-208ENST00000537983 CACNB1Q02641 598 aaPredicted RBP11.58□□□□□ -0.56
NPIPB3-208ENST00000537983 FBLN2P98095 1184 aa11.51□□□□□ -0.57
NPIPB3-208ENST00000537983 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
NPIPB3-208ENST00000537983 SPDYE4A6NLX3 237 aa11.38□□□□□ -0.59
NPIPB3-208ENST00000537983 PROM2Q8N271 834 aa11.3□□□□□ -0.6
NPIPB3-208ENST00000537983 OSCARQ8IYS5 282 aa11.27□□□□□ -0.61
NPIPB3-208ENST00000537983 SPDYE2BA6NHP3 402 aa11.21□□□□□ -0.61
NPIPB3-208ENST00000537983 SPDYE6P0CI01 402 aa11.21□□□□□ -0.61
NPIPB3-208ENST00000537983 SPDYE2Q495Y8 402 aa11.21□□□□□ -0.61
NPIPB3-208ENST00000537983 SSUH2Q9Y2M2 353 aa11.18□□□□□ -0.62
NPIPB3-208ENST00000537983 ZNF692Q9BU19 519 aaPredicted RBP11.16□□□□□ -0.62
NPIPB3-208ENST00000537983 FBXO3Q9UK99 471 aa11.11□□□□□ -0.63
NPIPB3-208ENST00000537983 PABPN1Q86U42 306 aaKnown RBP eCLIP11.03□□□□□ -0.64
NPIPB3-208ENST00000537983 RBM42Q9BTD8 480 aaKnown RBP11.01□□□□□ -0.65
NPIPB3-208ENST00000537983 VASPP50552 380 aaPredicted RBP10.99□□□□□ -0.65
NPIPB3-208ENST00000537983 RTN4Q9NQC3 1192 aaKnown RBP10.95□□□□□ -0.66
NPIPB3-208ENST00000537983 AMER1Q5JTC6 1135 aaPredicted RBP10.94□□□□□ -0.66
NPIPB3-208ENST00000537983 AKT1S1Q96B36 256 aa10.93□□□□□ -0.66
NPIPB3-208ENST00000537983 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
NPIPB3-208ENST00000537983 IFNLR1Q8IU57 520 aaPredicted RBP10.86□□□□□ -0.67
NPIPB3-208ENST00000537983 REM2Q8IYK8 340 aaPredicted RBP10.83□□□□□ -0.68
NPIPB3-208ENST00000537983 CCDC180Q9P1Z9 1646 aa10.81□□□□□ -0.68
NPIPB3-208ENST00000537983 SPDYE1Q8NFV5 336 aaPredicted RBP10.81□□□□□ -0.68
NPIPB3-208ENST00000537983 PLCD3Q8N3E9 789 aa10.74□□□□□ -0.69
NPIPB3-208ENST00000537983 MIER1Q8N108 512 aa10.73□□□□□ -0.69
NPIPB3-208ENST00000537983 PITPNM1O00562 1244 aa10.71□□□□□ -0.69
NPIPB3-208ENST00000537983 CLEC11AQ9Y240 323 aa10.71□□□□□ -0.69
NPIPB3-208ENST00000537983 KLHL34Q8N239 644 aa10.68□□□□□ -0.7
NPIPB3-208ENST00000537983 SPOCK2Q92563 424 aa10.67□□□□□ -0.7
NPIPB3-208ENST00000537983 PRR29P0C7W0 189 aa10.65□□□□□ -0.7
NPIPB3-208ENST00000537983 PLEKHG5O94827 1062 aa10.63□□□□□ -0.71
NPIPB3-208ENST00000537983 CREBZFQ9NS37 354 aa10.63□□□□□ -0.71
NPIPB3-208ENST00000537983 ZBTB47Q9UFB7 747 aaPredicted RBP10.62□□□□□ -0.71
NPIPB3-208ENST00000537983 PKD2Q13563 968 aa10.59□□□□□ -0.71
NPIPB3-208ENST00000537983 MNX1P50219 401 aaPredicted RBP10.58□□□□□ -0.72
NPIPB3-208ENST00000537983 NUBP1P53384 320 aa10.51□□□□□ -0.73
NPIPB3-208ENST00000537983 FXR2P51116 673 aaKnown RBP eCLIP10.48□□□□□ -0.73
NPIPB3-208ENST00000537983 CHRDL2Q6WN34 429 aa10.47□□□□□ -0.73
NPIPB3-208ENST00000537983 CHADLQ6NUI6 762 aa10.46□□□□□ -0.73
NPIPB3-208ENST00000537983 ECM2O94769 699 aaPredicted RBP10.44□□□□□ -0.74
NPIPB3-208ENST00000537983 CIZ1Q9ULV3 898 aaPredicted RBP10.43□□□□□ -0.74
NPIPB3-208ENST00000537983 PRKAR2AP13861 404 aaKnown RBP10.42□□□□□ -0.74
NPIPB3-208ENST00000537983 RASEFQ8IZ41 740 aa10.41□□□□□ -0.74
NPIPB3-208ENST00000537983 ZCCHC6Q5VYS8 1495 aaKnown RBP10.41□□□□□ -0.74
NPIPB3-208ENST00000537983 NPM1P06748 294 aaKnown RBP eCLIP10.4□□□□□ -0.74
NPIPB3-208ENST00000537983 GSE1Q14687 1217 aa10.4□□□□□ -0.74
NPIPB3-208ENST00000537983 PIP4P2Q8N4L2 257 aa10.4□□□□□ -0.74
NPIPB3-208ENST00000537983 FARP1Q9Y4F1 1045 aaPredicted RBP10.4□□□□□ -0.74
NPIPB3-208ENST00000537983 TRIM41Q8WV44 630 aa10.38□□□□□ -0.75
NPIPB3-208ENST00000537983 RGL2O15211 777 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 209.6 ms