RNA–Protein interactions for RNA: ENST00000534625.1

ATM-224, Transcript of ATM serine/threonine kinase, humanhuman

TSL 5

Gene ATM, Length 725 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATM-224ENST00000534625 AEBP2Q6ZN18 517 aaPredicted RBP25.49■■□□□ 1.67
ATM-224ENST00000534625 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
ATM-224ENST00000534625 SENP3Q9H4L4 574 aaPredicted RBP21.71■■□□□ 1.07
ATM-224ENST00000534625 PHF23Q9BUL5 403 aaPredicted RBP21.45■■□□□ 1.02
ATM-224ENST00000534625 FOXD1Q16676 465 aa20.33■□□□□ 0.85
ATM-224ENST00000534625 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
ATM-224ENST00000534625 MSH5O43196 834 aa19.06■□□□□ 0.64
ATM-224ENST00000534625 PLPPR3Q6T4P5 718 aa18.95■□□□□ 0.62
ATM-224ENST00000534625 PIAS4Q8N2W9 510 aaPredicted RBP18.91■□□□□ 0.62
ATM-224ENST00000534625 PPP6R1Q9UPN7 881 aa18.83■□□□□ 0.6
ATM-224ENST00000534625 ADRA2BP18089 450 aa18.76■□□□□ 0.59
ATM-224ENST00000534625 MAPK8IP2Q13387 824 aaPredicted RBP17.33■□□□□ 0.36
ATM-224ENST00000534625 DMRT2Q9Y5R5 561 aa17.18■□□□□ 0.34
ATM-224ENST00000534625 SCAF1Q9H7N4 1312 aaKnown RBP17.08■□□□□ 0.32
ATM-224ENST00000534625 PPP4R3CPQ6ZMV5 832 aa16.61■□□□□ 0.25
ATM-224ENST00000534625 CACNB1Q02641 598 aaPredicted RBP16.58■□□□□ 0.24
ATM-224ENST00000534625 DCAF8L1A6NGE4 600 aa16.55■□□□□ 0.24
ATM-224ENST00000534625 HOXD11P31277 338 aaPredicted RBP16.45■□□□□ 0.22
ATM-224ENST00000534625 CNKSR2Q8WXI2 1034 aa16.33■□□□□ 0.2
ATM-224ENST00000534625 RNF39Q9H2S5 420 aa16.27■□□□□ 0.2
ATM-224ENST00000534625 RNF216Q9NWF9 866 aaPredicted RBP16.25■□□□□ 0.19
ATM-224ENST00000534625 C1QBPQ07021 282 aaKnown RBP15.99■□□□□ 0.15
ATM-224ENST00000534625 DNAJC5BQ9UF47 199 aa15.88■□□□□ 0.13
ATM-224ENST00000534625 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
ATM-224ENST00000534625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.7■□□□□ 0.14e-7■■■□□ 14.6
ATM-224ENST00000534625 NPM3O75607 178 aaKnown RBP15.66■□□□□ 0.1
ATM-224ENST00000534625 KCNA4P22459 653 aa15.44■□□□□ 0.06
ATM-224ENST00000534625 U3KPZ7 1027 aaPredicted RBP15.34■□□□□ 0.05
ATM-224ENST00000534625 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
ATM-224ENST00000534625 CAPN15O75808 1086 aa15.2■□□□□ 0.02
ATM-224ENST00000534625 DSG3P32926 999 aa15.17■□□□□ 0.02
ATM-224ENST00000534625 SLC4A2P04920 1241 aa15.04■□□□□ -0
ATM-224ENST00000534625 POTEHQ6S545 545 aa14.93□□□□□ -0.02
ATM-224ENST00000534625 TRHP20396 242 aaPredicted RBP14.9□□□□□ -0.02
ATM-224ENST00000534625 ABCB7O75027 752 aa14.84□□□□□ -0.03
ATM-224ENST00000534625 APLP2Q06481 763 aa14.8□□□□□ -0.04
ATM-224ENST00000534625 ZNF219Q9P2Y4 722 aaPredicted RBP14.79□□□□□ -0.04
ATM-224ENST00000534625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.74□□□□□ -0.05
ATM-224ENST00000534625 HNRNPUL2Q1KMD3 747 aaKnown RBP14.74□□□□□ -0.05
ATM-224ENST00000534625 SAMD1Q6SPF0 538 aaPredicted RBP14.66□□□□□ -0.06
ATM-224ENST00000534625 SLC4A1APQ9BWU0 796 aaKnown RBP14.57□□□□□ -0.08
ATM-224ENST00000534625 MYCNP04198 464 aaPredicted RBP14.45□□□□□ -0.1
ATM-224ENST00000534625 POLA2Q14181 598 aa14.43□□□□□ -0.1
ATM-224ENST00000534625 RBM42Q9BTD8 480 aaKnown RBP14.41□□□□□ -0.1
ATM-224ENST00000534625 FOXD4L1Q9NU39 408 aa14.27□□□□□ -0.13
ATM-224ENST00000534625 CHRDL2Q6WN34 429 aa14.25□□□□□ -0.13
ATM-224ENST00000534625 ZBTB22O15209 634 aa14.23□□□□□ -0.13
ATM-224ENST00000534625 ATF5Q9Y2D1 282 aaPredicted RBP14.22□□□□□ -0.13
ATM-224ENST00000534625 AKT1S1Q96B36 256 aa14.05□□□□□ -0.16
ATM-224ENST00000534625 ZBTB12Q9Y330 459 aaPredicted RBP14.03□□□□□ -0.16
ATM-224ENST00000534625 OSCARQ8IYS5 282 aa13.96□□□□□ -0.17
ATM-224ENST00000534625 REM2Q8IYK8 340 aaPredicted RBP13.95□□□□□ -0.18
ATM-224ENST00000534625 PIP4P2Q8N4L2 257 aa13.87□□□□□ -0.19
ATM-224ENST00000534625 SP7Q8TDD2 431 aaPredicted RBP13.85□□□□□ -0.19
ATM-224ENST00000534625 CSRNP3Q8WYN3 585 aa13.81□□□□□ -0.2
ATM-224ENST00000534625 PITPNM1O00562 1244 aa13.8□□□□□ -0.2
ATM-224ENST00000534625 ATXN8OSP0DMR3 200 aa13.8□□□□□ -0.2
ATM-224ENST00000534625 FXR2P51116 673 aaKnown RBP eCLIP13.73□□□□□ -0.21
ATM-224ENST00000534625 HAX1O00165 279 aa13.71□□□□□ -0.21
ATM-224ENST00000534625 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
ATM-224ENST00000534625 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
ATM-224ENST00000534625 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
ATM-224ENST00000534625 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
ATM-224ENST00000534625 FBLN2P98095 1184 aa13.6□□□□□ -0.23
ATM-224ENST00000534625 EVX2Q03828 476 aa13.56□□□□□ -0.24
ATM-224ENST00000534625 MKRN4PQ13434 485 aaPredicted RBP13.53□□□□□ -0.24
ATM-224ENST00000534625 CLEC11AQ9Y240 323 aa13.49□□□□□ -0.25
ATM-224ENST00000534625 PRKAR2AP13861 404 aaKnown RBP13.45□□□□□ -0.26
ATM-224ENST00000534625 ZNF692Q9BU19 519 aaPredicted RBP13.45□□□□□ -0.26
ATM-224ENST00000534625 SPDYE1Q8NFV5 336 aaPredicted RBP13.44□□□□□ -0.26
ATM-224ENST00000534625 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
ATM-224ENST00000534625 C19orf67A6NJJ6 358 aa13.3□□□□□ -0.28
ATM-224ENST00000534625 CHADLQ6NUI6 762 aa13.28□□□□□ -0.28
ATM-224ENST00000534625 PABPN1Q86U42 306 aaKnown RBP eCLIP13.24□□□□□ -0.29
ATM-224ENST00000534625 PRR29P0C7W0 189 aa13.21□□□□□ -0.29
ATM-224ENST00000534625 GABBR2O75899 941 aa13.2□□□□□ -0.3
ATM-224ENST00000534625 LHX8Q68G74 356 aa13.01□□□□□ -0.33
ATM-224ENST00000534625 FARP1Q9Y4F1 1045 aaPredicted RBP13.01□□□□□ -0.33
ATM-224ENST00000534625 CD44P16070 742 aaKnown RBP13□□□□□ -0.33
ATM-224ENST00000534625 POTEIP0CG38 1075 aa12.93□□□□□ -0.34
ATM-224ENST00000534625 NISCHQ9Y2I1 1504 aa12.85□□□□□ -0.35
ATM-224ENST00000534625 CREBZFQ9NS37 354 aa12.82□□□□□ -0.36
ATM-224ENST00000534625 SPDYE4A6NLX3 237 aa12.8□□□□□ -0.36
ATM-224ENST00000534625 CLCN6P51797 869 aa12.8□□□□□ -0.36
ATM-224ENST00000534625 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
ATM-224ENST00000534625 DCBLD2Q96PD2 775 aa12.77□□□□□ -0.37
ATM-224ENST00000534625 STAG3Q9UJ98 1225 aa12.77□□□□□ -0.37
ATM-224ENST00000534625 ZNF579Q8NAF0 562 aaKnown RBP12.76□□□□□ -0.37
ATM-224ENST00000534625 GALR2O43603 387 aaPredicted RBP12.67□□□□□ -0.38
ATM-224ENST00000534625 PROM2Q8N271 834 aa12.6□□□□□ -0.39
ATM-224ENST00000534625 PHF12Q96QT6 1004 aa12.59□□□□□ -0.39
ATM-224ENST00000534625 PAK3O75914 559 aaPredicted RBP12.57□□□□□ -0.4
ATM-224ENST00000534625 MNX1P50219 401 aaPredicted RBP12.56□□□□□ -0.4
ATM-224ENST00000534625 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
ATM-224ENST00000534625 POTEB2H3BUK9 544 aa12.52□□□□□ -0.41
ATM-224ENST00000534625 OTUD5Q96G74 571 aa12.5□□□□□ -0.41
ATM-224ENST00000534625 PELP1Q8IZL8 1130 aaKnown RBP12.47□□□□□ -0.41
ATM-224ENST00000534625 FKBP8Q14318 412 aa12.44□□□□□ -0.42
ATM-224ENST00000534625 PLSCR2Q9NRY7 297 aa12.42□□□□□ -0.42
ATM-224ENST00000534625 MS4A3Q96HJ5 214 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms