RNA–Protein interactions for RNA: ENST00000529963.1

AMBRA1-209, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 1 (best)

Gene AMBRA1, Length 1,529 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-209ENST00000529963 AEBP2Q6ZN18 517 aaPredicted RBP22.84■■□□□ 1.25
AMBRA1-209ENST00000529963 CHIC1Q5VXU3 224 aa22.41■■□□□ 1.18
AMBRA1-209ENST00000529963 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
AMBRA1-209ENST00000529963 SENP3Q9H4L4 574 aaPredicted RBP19.23■□□□□ 0.67
AMBRA1-209ENST00000529963 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
AMBRA1-209ENST00000529963 FOXD1Q16676 465 aa17.91■□□□□ 0.46
AMBRA1-209ENST00000529963 PPP6R1Q9UPN7 881 aa17.44■□□□□ 0.38
AMBRA1-209ENST00000529963 ADRA2BP18089 450 aa17.43■□□□□ 0.38
AMBRA1-209ENST00000529963 PIAS4Q8N2W9 510 aaPredicted RBP16.93■□□□□ 0.3
AMBRA1-209ENST00000529963 MSH5O43196 834 aa16.34■□□□□ 0.21
AMBRA1-209ENST00000529963 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
AMBRA1-209ENST00000529963 KCNA4P22459 653 aa16.06■□□□□ 0.16
AMBRA1-209ENST00000529963 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
AMBRA1-209ENST00000529963 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
AMBRA1-209ENST00000529963 NCBP3Q53F19 620 aaKnown RBP15.72■□□□□ 0.11
AMBRA1-209ENST00000529963 CNKSR2Q8WXI2 1034 aa15.62■□□□□ 0.09
AMBRA1-209ENST00000529963 NPM3O75607 178 aaKnown RBP15.58■□□□□ 0.08
AMBRA1-209ENST00000529963 DMRT2Q9Y5R5 561 aa15.4■□□□□ 0.06
AMBRA1-209ENST00000529963 SLC4A1APQ9BWU0 796 aaKnown RBP15.28■□□□□ 0.04
AMBRA1-209ENST00000529963 RNF216Q9NWF9 866 aaPredicted RBP15.25■□□□□ 0.03
AMBRA1-209ENST00000529963 EHMT2Q96KQ7 1210 aa15.17■□□□□ 0.02
AMBRA1-209ENST00000529963 HOXD11P31277 338 aaPredicted RBP15.14■□□□□ 0.01
AMBRA1-209ENST00000529963 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
AMBRA1-209ENST00000529963 CSRNP3Q8WYN3 585 aa14.85□□□□□ -0.03
AMBRA1-209ENST00000529963 DCAF8L1A6NGE4 600 aa14.84□□□□□ -0.03
AMBRA1-209ENST00000529963 ZBTB22O15209 634 aa14.81□□□□□ -0.04
AMBRA1-209ENST00000529963 SLC4A2P04920 1241 aa14.67□□□□□ -0.06
AMBRA1-209ENST00000529963 FOXD4L1Q9NU39 408 aa14.65□□□□□ -0.06
AMBRA1-209ENST00000529963 POTEDQ86YR6 584 aa14.63□□□□□ -0.07
AMBRA1-209ENST00000529963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.49□□□□□ -0.09
AMBRA1-209ENST00000529963 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
AMBRA1-209ENST00000529963 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
AMBRA1-209ENST00000529963 RNF39Q9H2S5 420 aa14.06□□□□□ -0.16
AMBRA1-209ENST00000529963 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
AMBRA1-209ENST00000529963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.05□□□□□ -0.16
AMBRA1-209ENST00000529963 HNRNPUL2Q1KMD3 747 aaKnown RBP14.05□□□□□ -0.16
AMBRA1-209ENST00000529963 ATXN8OSP0DMR3 200 aa14.04□□□□□ -0.16
AMBRA1-209ENST00000529963 SAMD1Q6SPF0 538 aaPredicted RBP14.04□□□□□ -0.16
AMBRA1-209ENST00000529963 SPINK5Q9NQ38 1064 aaPredicted RBP13.88□□□□□ -0.19
AMBRA1-209ENST00000529963 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
AMBRA1-209ENST00000529963 APLP2Q06481 763 aa13.83□□□□□ -0.2
AMBRA1-209ENST00000529963 TRHP20396 242 aaPredicted RBP13.79□□□□□ -0.2
AMBRA1-209ENST00000529963 CAPN15O75808 1086 aa13.78□□□□□ -0.2
AMBRA1-209ENST00000529963 ZNF219Q9P2Y4 722 aaPredicted RBP13.74□□□□□ -0.21
AMBRA1-209ENST00000529963 CACNB1Q02641 598 aaPredicted RBP13.59□□□□□ -0.23
AMBRA1-209ENST00000529963 ABCB7O75027 752 aa13.59□□□□□ -0.23
AMBRA1-209ENST00000529963 POLA2Q14181 598 aa13.59□□□□□ -0.23
AMBRA1-209ENST00000529963 DSG3P32926 999 aa13.48□□□□□ -0.25
AMBRA1-209ENST00000529963 FKBP8Q14318 412 aa13.42□□□□□ -0.26
AMBRA1-209ENST00000529963 MKRN4PQ13434 485 aaPredicted RBP13.41□□□□□ -0.26
AMBRA1-209ENST00000529963 FBLN2P98095 1184 aa13.33□□□□□ -0.28
AMBRA1-209ENST00000529963 ZBTB12Q9Y330 459 aaPredicted RBP13.23□□□□□ -0.29
AMBRA1-209ENST00000529963 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
AMBRA1-209ENST00000529963 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
AMBRA1-209ENST00000529963 ZNF692Q9BU19 519 aaPredicted RBP12.99□□□□□ -0.33
AMBRA1-209ENST00000529963 SPDYE2BA6NHP3 402 aa12.94□□□□□ -0.34
AMBRA1-209ENST00000529963 SPDYE6P0CI01 402 aa12.94□□□□□ -0.34
AMBRA1-209ENST00000529963 SPDYE2Q495Y8 402 aa12.94□□□□□ -0.34
AMBRA1-209ENST00000529963 PROM2Q8N271 834 aa12.92□□□□□ -0.34
AMBRA1-209ENST00000529963 SSUH2Q9Y2M2 353 aa12.88□□□□□ -0.35
AMBRA1-209ENST00000529963 PABPN1Q86U42 306 aaKnown RBP eCLIP12.84□□□□□ -0.35
AMBRA1-209ENST00000529963 FBXO3Q9UK99 471 aa12.78□□□□□ -0.36
AMBRA1-209ENST00000529963 RBM42Q9BTD8 480 aaKnown RBP12.74□□□□□ -0.37
AMBRA1-209ENST00000529963 VASPP50552 380 aaPredicted RBP12.66□□□□□ -0.38
AMBRA1-209ENST00000529963 AKT1S1Q96B36 256 aa12.66□□□□□ -0.38
AMBRA1-209ENST00000529963 REM2Q8IYK8 340 aaPredicted RBP12.6□□□□□ -0.39
AMBRA1-209ENST00000529963 RTN4Q9NQC3 1192 aaKnown RBP12.57□□□□□ -0.4
AMBRA1-209ENST00000529963 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
AMBRA1-209ENST00000529963 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
AMBRA1-209ENST00000529963 IFNLR1Q8IU57 520 aaPredicted RBP12.54□□□□□ -0.4
AMBRA1-209ENST00000529963 SPDYE1Q8NFV5 336 aaPredicted RBP12.52□□□□□ -0.4
AMBRA1-209ENST00000529963 MIER1Q8N108 512 aa12.49□□□□□ -0.41
AMBRA1-209ENST00000529963 PLCD3Q8N3E9 789 aa12.49□□□□□ -0.41
AMBRA1-209ENST00000529963 AMER1Q5JTC6 1135 aaPredicted RBP12.47□□□□□ -0.41
AMBRA1-209ENST00000529963 PITPNM1O00562 1244 aa12.47□□□□□ -0.41
AMBRA1-209ENST00000529963 KLHL34Q8N239 644 aa12.44□□□□□ -0.42
AMBRA1-209ENST00000529963 PRR29P0C7W0 189 aa12.42□□□□□ -0.42
AMBRA1-209ENST00000529963 NISCHQ9Y2I1 1504 aa12.4□□□□□ -0.42
AMBRA1-209ENST00000529963 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
AMBRA1-209ENST00000529963 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
AMBRA1-209ENST00000529963 SPOCK2Q92563 424 aa12.31□□□□□ -0.44
AMBRA1-209ENST00000529963 CHADLQ6NUI6 762 aa12.27□□□□□ -0.45
AMBRA1-209ENST00000529963 ZBTB47Q9UFB7 747 aaPredicted RBP12.22□□□□□ -0.45
AMBRA1-209ENST00000529963 CHRDL2Q6WN34 429 aa12.21□□□□□ -0.45
AMBRA1-209ENST00000529963 MNX1P50219 401 aaPredicted RBP12.21□□□□□ -0.46
AMBRA1-209ENST00000529963 PKD2Q13563 968 aa12.19□□□□□ -0.46
AMBRA1-209ENST00000529963 PRKAR2AP13861 404 aaKnown RBP12.16□□□□□ -0.46
AMBRA1-209ENST00000529963 FXR2P51116 673 aaKnown RBP eCLIP12.15□□□□□ -0.46
AMBRA1-209ENST00000529963 CIZ1Q9ULV3 898 aaPredicted RBP12.15□□□□□ -0.46
AMBRA1-209ENST00000529963 NUBP1P53384 320 aa12.13□□□□□ -0.47
AMBRA1-209ENST00000529963 PIP4P2Q8N4L2 257 aa12.13□□□□□ -0.47
AMBRA1-209ENST00000529963 FARP1Q9Y4F1 1045 aaPredicted RBP12.08□□□□□ -0.48
AMBRA1-209ENST00000529963 ECM2O94769 699 aaPredicted RBP12.07□□□□□ -0.48
AMBRA1-209ENST00000529963 RASEFQ8IZ41 740 aa12.07□□□□□ -0.48
AMBRA1-209ENST00000529963 DCAF8Q5TAQ9 597 aa12.06□□□□□ -0.48
AMBRA1-209ENST00000529963 NPM1P06748 294 aaKnown RBP eCLIP12.05□□□□□ -0.48
AMBRA1-209ENST00000529963 DCAF8L2P0C7V8 631 aa12.04□□□□□ -0.48
AMBRA1-209ENST00000529963 GSE1Q14687 1217 aa12□□□□□ -0.49
AMBRA1-209ENST00000529963 FAM212AQ96EL1 285 aa12□□□□□ -0.49
AMBRA1-209ENST00000529963 RGL2O15211 777 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms