RNA–Protein interactions for RNA: ENST00000523062.1

CSMD1-211, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 3

Gene CSMD1, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-211ENST00000523062 AEBP2Q6ZN18 517 aaPredicted RBP25.96■■□□□ 1.75
CSMD1-211ENST00000523062 CHIC1Q5VXU3 224 aa24.37■■□□□ 1.49
CSMD1-211ENST00000523062 SENP3Q9H4L4 574 aaPredicted RBP22.36■■□□□ 1.17
CSMD1-211ENST00000523062 PHF23Q9BUL5 403 aaPredicted RBP21.94■■□□□ 1.1
CSMD1-211ENST00000523062 FOXD1Q16676 465 aa20.84■□□□□ 0.93
CSMD1-211ENST00000523062 POTEDQ86YR6 584 aa20.3■□□□□ 0.84
CSMD1-211ENST00000523062 MSH5O43196 834 aa19.82■□□□□ 0.76
CSMD1-211ENST00000523062 PIAS4Q8N2W9 510 aaPredicted RBP19.35■□□□□ 0.69
CSMD1-211ENST00000523062 PLPPR3Q6T4P5 718 aa19.05■□□□□ 0.64
CSMD1-211ENST00000523062 PPP6R1Q9UPN7 881 aa18.99■□□□□ 0.63
CSMD1-211ENST00000523062 ADRA2BP18089 450 aa18.91■□□□□ 0.62
CSMD1-211ENST00000523062 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
CSMD1-211ENST00000523062 MAPK8IP2Q13387 824 aaPredicted RBP17.54■□□□□ 0.4
CSMD1-211ENST00000523062 SCAF1Q9H7N4 1312 aaKnown RBP17.44■□□□□ 0.38
CSMD1-211ENST00000523062 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CSMD1-211ENST00000523062 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
CSMD1-211ENST00000523062 RNF39Q9H2S5 420 aa16.81■□□□□ 0.28
CSMD1-211ENST00000523062 HOXD11P31277 338 aaPredicted RBP16.72■□□□□ 0.27
CSMD1-211ENST00000523062 C1QBPQ07021 282 aaKnown RBP16.58■□□□□ 0.24
CSMD1-211ENST00000523062 PPP4R3CPQ6ZMV5 832 aa16.58■□□□□ 0.24
CSMD1-211ENST00000523062 CNKSR2Q8WXI2 1034 aa16.45■□□□□ 0.22
CSMD1-211ENST00000523062 RNF216Q9NWF9 866 aaPredicted RBP16.45■□□□□ 0.22
CSMD1-211ENST00000523062 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
CSMD1-211ENST00000523062 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.95■□□□□ 0.14
CSMD1-211ENST00000523062 NCBP3Q53F19 620 aaKnown RBP15.84■□□□□ 0.13
CSMD1-211ENST00000523062 POTEHQ6S545 545 aa15.81■□□□□ 0.12
CSMD1-211ENST00000523062 NPM3O75607 178 aaKnown RBP15.54■□□□□ 0.08
CSMD1-211ENST00000523062 DSG3P32926 999 aa15.53■□□□□ 0.08
CSMD1-211ENST00000523062 CAPN15O75808 1086 aa15.49■□□□□ 0.07
CSMD1-211ENST00000523062 U3KPZ7 1027 aaPredicted RBP15.49■□□□□ 0.07
CSMD1-211ENST00000523062 SPINK5Q9NQ38 1064 aaPredicted RBP15.43■□□□□ 0.06
CSMD1-211ENST00000523062 NISCHQ9Y2I1 1504 aa15.26■□□□□ 0.03
CSMD1-211ENST00000523062 APLP2Q06481 763 aa15.13■□□□□ 0.01
CSMD1-211ENST00000523062 TRHP20396 242 aaPredicted RBP15.08■□□□□ 0
CSMD1-211ENST00000523062 ZNF219Q9P2Y4 722 aaPredicted RBP15.08■□□□□ 0
CSMD1-211ENST00000523062 ABCB7O75027 752 aa15.03■□□□□ -0
CSMD1-211ENST00000523062 SLC4A2P04920 1241 aa15□□□□□ -0.01
CSMD1-211ENST00000523062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.96□□□□□ -0.01
CSMD1-211ENST00000523062 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
CSMD1-211ENST00000523062 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
CSMD1-211ENST00000523062 SAMD1Q6SPF0 538 aaPredicted RBP14.82□□□□□ -0.04
CSMD1-211ENST00000523062 KCNA4P22459 653 aa14.8□□□□□ -0.04
CSMD1-211ENST00000523062 CHRDL2Q6WN34 429 aa14.77□□□□□ -0.05
CSMD1-211ENST00000523062 POLA2Q14181 598 aa14.55□□□□□ -0.08
CSMD1-211ENST00000523062 SP7Q8TDD2 431 aaPredicted RBP14.54□□□□□ -0.08
CSMD1-211ENST00000523062 AKT1S1Q96B36 256 aa14.42□□□□□ -0.1
CSMD1-211ENST00000523062 MYCNP04198 464 aaPredicted RBP14.41□□□□□ -0.1
CSMD1-211ENST00000523062 ZBTB12Q9Y330 459 aaPredicted RBP14.28□□□□□ -0.12
CSMD1-211ENST00000523062 PIP4P2Q8N4L2 257 aa14.27□□□□□ -0.13
CSMD1-211ENST00000523062 REM2Q8IYK8 340 aaPredicted RBP14.25□□□□□ -0.13
CSMD1-211ENST00000523062 HAX1O00165 279 aa14.21□□□□□ -0.13
CSMD1-211ENST00000523062 ATF5Q9Y2D1 282 aaPredicted RBP14.13□□□□□ -0.15
CSMD1-211ENST00000523062 FXR2P51116 673 aaKnown RBP eCLIP14.1□□□□□ -0.15
CSMD1-211ENST00000523062 PITPNM1O00562 1244 aa14.07□□□□□ -0.16
CSMD1-211ENST00000523062 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
CSMD1-211ENST00000523062 FOXD4L1Q9NU39 408 aa13.95□□□□□ -0.18
CSMD1-211ENST00000523062 EVX2Q03828 476 aa13.9□□□□□ -0.18
CSMD1-211ENST00000523062 SLC4A1APQ9BWU0 796 aaKnown RBP13.84□□□□□ -0.19
CSMD1-211ENST00000523062 SPDYE2BA6NHP3 402 aa13.76□□□□□ -0.21
CSMD1-211ENST00000523062 SPDYE6P0CI01 402 aa13.76□□□□□ -0.21
CSMD1-211ENST00000523062 SPDYE2Q495Y8 402 aa13.76□□□□□ -0.21
CSMD1-211ENST00000523062 PRKAR2AP13861 404 aaKnown RBP13.73□□□□□ -0.21
CSMD1-211ENST00000523062 SPDYE1Q8NFV5 336 aaPredicted RBP13.68□□□□□ -0.22
CSMD1-211ENST00000523062 C19orf67A6NJJ6 358 aa13.67□□□□□ -0.22
CSMD1-211ENST00000523062 FBLN2P98095 1184 aa13.65□□□□□ -0.22
CSMD1-211ENST00000523062 LHX8Q68G74 356 aa13.65□□□□□ -0.22
CSMD1-211ENST00000523062 CLEC11AQ9Y240 323 aa13.64□□□□□ -0.23
CSMD1-211ENST00000523062 ZBTB22O15209 634 aa13.63□□□□□ -0.23
CSMD1-211ENST00000523062 GABBR2O75899 941 aa13.62□□□□□ -0.23
CSMD1-211ENST00000523062 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
CSMD1-211ENST00000523062 ZNF692Q9BU19 519 aaPredicted RBP13.48□□□□□ -0.25
CSMD1-211ENST00000523062 SSUH2Q9Y2M2 353 aa13.46□□□□□ -0.25
CSMD1-211ENST00000523062 MKRN4PQ13434 485 aaPredicted RBP13.44□□□□□ -0.26
CSMD1-211ENST00000523062 CHADLQ6NUI6 762 aa13.39□□□□□ -0.27
CSMD1-211ENST00000523062 PRR29P0C7W0 189 aa13.36□□□□□ -0.27
CSMD1-211ENST00000523062 CLCN6P51797 869 aa13.32□□□□□ -0.28
CSMD1-211ENST00000523062 CCDC180Q9P1Z9 1646 aa13.29□□□□□ -0.28
CSMD1-211ENST00000523062 POTEIP0CG38 1075 aa13.27□□□□□ -0.29
CSMD1-211ENST00000523062 PLSCR2Q9NRY7 297 aa13.26□□□□□ -0.29
CSMD1-211ENST00000523062 CD44P16070 742 aaKnown RBP13.25□□□□□ -0.29
CSMD1-211ENST00000523062 PABPN1Q86U42 306 aaKnown RBP eCLIP13.23□□□□□ -0.29
CSMD1-211ENST00000523062 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
CSMD1-211ENST00000523062 DCBLD2Q96PD2 775 aa13.17□□□□□ -0.3
CSMD1-211ENST00000523062 ZNF579Q8NAF0 562 aaKnown RBP13.03□□□□□ -0.32
CSMD1-211ENST00000523062 ZRANB1Q9UGI0 708 aa12.98□□□□□ -0.33
CSMD1-211ENST00000523062 OTUD5Q96G74 571 aa12.93□□□□□ -0.34
CSMD1-211ENST00000523062 GALR2O43603 387 aaPredicted RBP12.87□□□□□ -0.35
CSMD1-211ENST00000523062 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
CSMD1-211ENST00000523062 POTEMA6NI47 508 aa12.86□□□□□ -0.35
CSMD1-211ENST00000523062 CREBZFQ9NS37 354 aa12.83□□□□□ -0.36
CSMD1-211ENST00000523062 STAG3Q9UJ98 1225 aa12.83□□□□□ -0.36
CSMD1-211ENST00000523062 POTEB2H3BUK9 544 aa12.82□□□□□ -0.36
CSMD1-211ENST00000523062 PAK3O75914 559 aaPredicted RBP12.8□□□□□ -0.36
CSMD1-211ENST00000523062 POTEGQ6S5H5 508 aa12.8□□□□□ -0.36
CSMD1-211ENST00000523062 PCDH10Q9P2E7 1040 aa12.79□□□□□ -0.36
CSMD1-211ENST00000523062 PHF12Q96QT6 1004 aa12.7□□□□□ -0.38
CSMD1-211ENST00000523062 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
CSMD1-211ENST00000523062 PELP1Q8IZL8 1130 aaKnown RBP12.67□□□□□ -0.38
CSMD1-211ENST00000523062 DCAF1Q9Y4B6 1507 aa12.65□□□□□ -0.38
CSMD1-211ENST00000523062 MAMSTRQ6ZN01 415 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms