RNA–Protein interactions for RNA: ENST00000521640.5

CTNNA1-228, Transcript of catenin alpha 1, humanhuman

TSL 4

Gene CTNNA1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-228ENST00000521640 AEBP2Q6ZN18 517 aaPredicted RBP21.63■■□□□ 1.05
CTNNA1-228ENST00000521640 CHIC1Q5VXU3 224 aa20.94■□□□□ 0.94
CTNNA1-228ENST00000521640 PHF23Q9BUL5 403 aaPredicted RBP18.47■□□□□ 0.55
CTNNA1-228ENST00000521640 SENP3Q9H4L4 574 aaPredicted RBP18.26■□□□□ 0.51
CTNNA1-228ENST00000521640 FOXD1Q16676 465 aa17.03■□□□□ 0.32
CTNNA1-228ENST00000521640 PLPPR3Q6T4P5 718 aa16.91■□□□□ 0.3
CTNNA1-228ENST00000521640 PPP6R1Q9UPN7 881 aa16.34■□□□□ 0.21
CTNNA1-228ENST00000521640 ADRA2BP18089 450 aa16.3■□□□□ 0.2
CTNNA1-228ENST00000521640 PIAS4Q8N2W9 510 aaPredicted RBP16■□□□□ 0.15
CTNNA1-228ENST00000521640 MSH5O43196 834 aa15.65■□□□□ 0.1
CTNNA1-228ENST00000521640 PPP4R3CPQ6ZMV5 832 aa14.92□□□□□ -0.02
CTNNA1-228ENST00000521640 MAPK8IP2Q13387 824 aaPredicted RBP14.85□□□□□ -0.03
CTNNA1-228ENST00000521640 NISCHQ9Y2I1 1504 aa14.78□□□□□ -0.04
CTNNA1-228ENST00000521640 SCAF1Q9H7N4 1312 aaKnown RBP14.77□□□□□ -0.04
CTNNA1-228ENST00000521640 DMRT2Q9Y5R5 561 aa14.59□□□□□ -0.07
CTNNA1-228ENST00000521640 POTEDQ86YR6 584 aa14.54□□□□□ -0.08
CTNNA1-228ENST00000521640 KCNA4P22459 653 aa14.5□□□□□ -0.09
CTNNA1-228ENST00000521640 CNKSR2Q8WXI2 1034 aa14.49□□□□□ -0.09
CTNNA1-228ENST00000521640 NCBP3Q53F19 620 aaKnown RBP14.41□□□□□ -0.1
CTNNA1-228ENST00000521640 NPM3O75607 178 aaKnown RBP14.31□□□□□ -0.12
CTNNA1-228ENST00000521640 HOXD11P31277 338 aaPredicted RBP14.24□□□□□ -0.13
CTNNA1-228ENST00000521640 RNF216Q9NWF9 866 aaPredicted RBP14.24□□□□□ -0.13
CTNNA1-228ENST00000521640 DCAF8L1A6NGE4 600 aa13.95□□□□□ -0.18
CTNNA1-228ENST00000521640 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
CTNNA1-228ENST00000521640 SLC4A1APQ9BWU0 796 aaKnown RBP13.73□□□□□ -0.21
CTNNA1-228ENST00000521640 SLC4A2P04920 1241 aa13.57□□□□□ -0.24
CTNNA1-228ENST00000521640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.54□□□□□ -0.249e-8■□□□□ 9.6
CTNNA1-228ENST00000521640 RNF39Q9H2S5 420 aa13.46□□□□□ -0.25
CTNNA1-228ENST00000521640 ZBTB22O15209 634 aa13.38□□□□□ -0.27
CTNNA1-228ENST00000521640 U3KPZ7 1027 aaPredicted RBP13.37□□□□□ -0.27
CTNNA1-228ENST00000521640 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
CTNNA1-228ENST00000521640 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
CTNNA1-228ENST00000521640 C1QBPQ07021 282 aaKnown RBP13.24□□□□□ -0.29
CTNNA1-228ENST00000521640 CSRNP3Q8WYN3 585 aa13.17□□□□□ -0.3
CTNNA1-228ENST00000521640 MYCNP04198 464 aaPredicted RBP13.16□□□□□ -0.3
CTNNA1-228ENST00000521640 CACNB1Q02641 598 aaPredicted RBP13.16□□□□□ -0.3
CTNNA1-228ENST00000521640 SPINK5Q9NQ38 1064 aaPredicted RBP13.05□□□□□ -0.32
CTNNA1-228ENST00000521640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
CTNNA1-228ENST00000521640 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
CTNNA1-228ENST00000521640 SAMD1Q6SPF0 538 aaPredicted RBP13.02□□□□□ -0.33
CTNNA1-228ENST00000521640 CAPN15O75808 1086 aa12.94□□□□□ -0.34
CTNNA1-228ENST00000521640 ATF5Q9Y2D1 282 aaPredicted RBP12.93□□□□□ -0.34
CTNNA1-228ENST00000521640 CCDC180Q9P1Z9 1646 aa12.91□□□□□ -0.34
CTNNA1-228ENST00000521640 APLP2Q06481 763 aa12.89□□□□□ -0.35
CTNNA1-228ENST00000521640 TRHP20396 242 aaPredicted RBP12.87□□□□□ -0.35
CTNNA1-228ENST00000521640 ATXN8OSP0DMR3 200 aa12.81□□□□□ -0.36
CTNNA1-228ENST00000521640 ZNF219Q9P2Y4 722 aaPredicted RBP12.79□□□□□ -0.36
CTNNA1-228ENST00000521640 DSG3P32926 999 aa12.78□□□□□ -0.36
CTNNA1-228ENST00000521640 ABCB7O75027 752 aa12.73□□□□□ -0.37
CTNNA1-228ENST00000521640 POLA2Q14181 598 aa12.64□□□□□ -0.39
CTNNA1-228ENST00000521640 ZCCHC6Q5VYS8 1495 aaKnown RBP12.49□□□□□ -0.41
CTNNA1-228ENST00000521640 DCAF1Q9Y4B6 1507 aa12.36□□□□□ -0.43
CTNNA1-228ENST00000521640 MKRN4PQ13434 485 aaPredicted RBP12.35□□□□□ -0.43
CTNNA1-228ENST00000521640 ZBTB12Q9Y330 459 aaPredicted RBP12.33□□□□□ -0.44
CTNNA1-228ENST00000521640 FBLN2P98095 1184 aa12.26□□□□□ -0.45
CTNNA1-228ENST00000521640 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
CTNNA1-228ENST00000521640 MYO15BQ96JP2 1530 aa12.16□□□□□ -0.46
CTNNA1-228ENST00000521640 RBM42Q9BTD8 480 aaKnown RBP12.09□□□□□ -0.47
CTNNA1-228ENST00000521640 SPDYE2BA6NHP3 402 aa12.02□□□□□ -0.49
CTNNA1-228ENST00000521640 SPDYE6P0CI01 402 aa12.02□□□□□ -0.49
CTNNA1-228ENST00000521640 SPDYE2Q495Y8 402 aa12.02□□□□□ -0.49
CTNNA1-228ENST00000521640 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
CTNNA1-228ENST00000521640 SSUH2Q9Y2M2 353 aa11.97□□□□□ -0.49
CTNNA1-228ENST00000521640 SPDYE4A6NLX3 237 aa11.95□□□□□ -0.5
CTNNA1-228ENST00000521640 AKT1S1Q96B36 256 aa11.95□□□□□ -0.5
CTNNA1-228ENST00000521640 NACADO15069 1562 aa11.94□□□□□ -0.5
CTNNA1-228ENST00000521640 SHROOM4Q9ULL8 1493 aa11.94□□□□□ -0.5
CTNNA1-228ENST00000521640 FKBP8Q14318 412 aa11.88□□□□□ -0.51
CTNNA1-228ENST00000521640 REM2Q8IYK8 340 aaPredicted RBP11.88□□□□□ -0.51
CTNNA1-228ENST00000521640 DCAF8L2P0C7V8 631 aa11.85□□□□□ -0.51
CTNNA1-228ENST00000521640 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
CTNNA1-228ENST00000521640 ABCC9O60706 1549 aa11.79□□□□□ -0.52
CTNNA1-228ENST00000521640 PITPNM1O00562 1244 aa11.77□□□□□ -0.53
CTNNA1-228ENST00000521640 RB1CC1Q8TDY2 1594 aa11.76□□□□□ -0.53
CTNNA1-228ENST00000521640 PROM2Q8N271 834 aa11.76□□□□□ -0.53
CTNNA1-228ENST00000521640 SCRIBQ14160 1630 aa11.71□□□□□ -0.53
CTNNA1-228ENST00000521640 CHRDL2Q6WN34 429 aa11.7□□□□□ -0.54
CTNNA1-228ENST00000521640 SPDYE1Q8NFV5 336 aaPredicted RBP11.7□□□□□ -0.54
CTNNA1-228ENST00000521640 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
CTNNA1-228ENST00000521640 SUPT5HO00267 1087 aaKnown RBP11.59□□□□□ -0.55
CTNNA1-228ENST00000521640 FXR2P51116 673 aaKnown RBP eCLIP11.55□□□□□ -0.561e-6■■□□□ 12.9
CTNNA1-228ENST00000521640 PIP4P2Q8N4L2 257 aa11.55□□□□□ -0.56
CTNNA1-228ENST00000521640 PRR29P0C7W0 189 aa11.54□□□□□ -0.56
CTNNA1-228ENST00000521640 STAG3Q9UJ98 1225 aa11.54□□□□□ -0.56
CTNNA1-228ENST00000521640 RSF1Q96T23 1441 aaPredicted RBP11.5□□□□□ -0.57
CTNNA1-228ENST00000521640 UNC13AQ9UPW8 1703 aa11.48□□□□□ -0.57
CTNNA1-228ENST00000521640 CHADLQ6NUI6 762 aa11.46□□□□□ -0.57
CTNNA1-228ENST00000521640 POTEHQ6S545 545 aa11.46□□□□□ -0.57
CTNNA1-228ENST00000521640 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
CTNNA1-228ENST00000521640 BAZ1AQ9NRL2 1556 aaPredicted RBP11.44□□□□□ -0.58
CTNNA1-228ENST00000521640 CREBZFQ9NS37 354 aa11.43□□□□□ -0.58
CTNNA1-228ENST00000521640 FBXO3Q9UK99 471 aa11.39□□□□□ -0.59
CTNNA1-228ENST00000521640 CECR2Q9BXF3 1484 aa11.37□□□□□ -0.59
CTNNA1-228ENST00000521640 MROH2BQ7Z745 1585 aa11.37□□□□□ -0.59
CTNNA1-228ENST00000521640 BICRAQ9NZM4 1560 aa11.36□□□□□ -0.59
CTNNA1-228ENST00000521640 MIER1Q8N108 512 aa11.33□□□□□ -0.6
CTNNA1-228ENST00000521640 SMARCA4P51532 1647 aa11.32□□□□□ -0.6
CTNNA1-228ENST00000521640 VASPP50552 380 aaPredicted RBP11.32□□□□□ -0.6
CTNNA1-228ENST00000521640 MNX1P50219 401 aaPredicted RBP11.31□□□□□ -0.6
CTNNA1-228ENST00000521640 FARP1Q9Y4F1 1045 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms