RNA–Protein interactions for RNA: ENST00000518043.5

CPS1-210, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 2

Gene CPS1, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-210ENST00000518043 AEBP2Q6ZN18 517 aaPredicted RBP23.25■■□□□ 1.31
CPS1-210ENST00000518043 CHIC1Q5VXU3 224 aa22.88■■□□□ 1.25
CPS1-210ENST00000518043 PHF23Q9BUL5 403 aaPredicted RBP20.15■□□□□ 0.82
CPS1-210ENST00000518043 SENP3Q9H4L4 574 aaPredicted RBP19.69■□□□□ 0.74
CPS1-210ENST00000518043 PLPPR3Q6T4P5 718 aa18.67■□□□□ 0.58
CPS1-210ENST00000518043 FOXD1Q16676 465 aa18.26■□□□□ 0.51
CPS1-210ENST00000518043 PPP6R1Q9UPN7 881 aa17.72■□□□□ 0.43
CPS1-210ENST00000518043 ADRA2BP18089 450 aa17.71■□□□□ 0.43
CPS1-210ENST00000518043 PIAS4Q8N2W9 510 aaPredicted RBP17.26■□□□□ 0.35
CPS1-210ENST00000518043 MSH5O43196 834 aa16.76■□□□□ 0.27
CPS1-210ENST00000518043 PPP4R3CPQ6ZMV5 832 aa16.47■□□□□ 0.23
CPS1-210ENST00000518043 KCNA4P22459 653 aa16.31■□□□□ 0.2
CPS1-210ENST00000518043 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
CPS1-210ENST00000518043 NISCHQ9Y2I1 1504 aa16.17■□□□□ 0.18
CPS1-210ENST00000518043 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
CPS1-210ENST00000518043 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
CPS1-210ENST00000518043 CNKSR2Q8WXI2 1034 aa15.97■□□□□ 0.15
CPS1-210ENST00000518043 NPM3O75607 178 aaKnown RBP15.86■□□□□ 0.13
CPS1-210ENST00000518043 DMRT2Q9Y5R5 561 aa15.75■□□□□ 0.11
CPS1-210ENST00000518043 RNF216Q9NWF9 866 aaPredicted RBP15.61■□□□□ 0.09
CPS1-210ENST00000518043 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
CPS1-210ENST00000518043 HOXD11P31277 338 aaPredicted RBP15.5■□□□□ 0.07
CPS1-210ENST00000518043 DNAJC5BQ9UF47 199 aa15.36■□□□□ 0.05
CPS1-210ENST00000518043 EHMT2Q96KQ7 1210 aa15.34■□□□□ 0.05
CPS1-210ENST00000518043 CSRNP3Q8WYN3 585 aa15.08■□□□□ 0
CPS1-210ENST00000518043 DCAF8L1A6NGE4 600 aa15.07■□□□□ 0
CPS1-210ENST00000518043 ZBTB22O15209 634 aa15.01□□□□□ -0.01
CPS1-210ENST00000518043 FOXD4L1Q9NU39 408 aa14.95□□□□□ -0.02
CPS1-210ENST00000518043 SLC4A2P04920 1241 aa14.94□□□□□ -0.02
CPS1-210ENST00000518043 POTEDQ86YR6 584 aa14.93□□□□□ -0.02
CPS1-210ENST00000518043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
CPS1-210ENST00000518043 MYCNP04198 464 aaPredicted RBP14.65□□□□□ -0.06
CPS1-210ENST00000518043 U3KPZ7 1027 aaPredicted RBP14.56□□□□□ -0.08
CPS1-210ENST00000518043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.43□□□□□ -0.1
CPS1-210ENST00000518043 HNRNPUL2Q1KMD3 747 aaKnown RBP14.43□□□□□ -0.1
CPS1-210ENST00000518043 ATXN8OSP0DMR3 200 aa14.41□□□□□ -0.1
CPS1-210ENST00000518043 SAMD1Q6SPF0 538 aaPredicted RBP14.38□□□□□ -0.11
CPS1-210ENST00000518043 RNF39Q9H2S5 420 aa14.38□□□□□ -0.11
CPS1-210ENST00000518043 ATF5Q9Y2D1 282 aaPredicted RBP14.26□□□□□ -0.13
CPS1-210ENST00000518043 APLP2Q06481 763 aa14.23□□□□□ -0.13
CPS1-210ENST00000518043 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
CPS1-210ENST00000518043 C1QBPQ07021 282 aaKnown RBP14.21□□□□□ -0.13
CPS1-210ENST00000518043 SPINK5Q9NQ38 1064 aaPredicted RBP14.1□□□□□ -0.15
CPS1-210ENST00000518043 CAPN15O75808 1086 aa14.03□□□□□ -0.16
CPS1-210ENST00000518043 TRHP20396 242 aaPredicted RBP14.01□□□□□ -0.17
CPS1-210ENST00000518043 ZNF219Q9P2Y4 722 aaPredicted RBP14.01□□□□□ -0.17
CPS1-210ENST00000518043 CACNB1Q02641 598 aaPredicted RBP13.87□□□□□ -0.19
CPS1-210ENST00000518043 POLA2Q14181 598 aa13.83□□□□□ -0.2
CPS1-210ENST00000518043 ABCB7O75027 752 aa13.79□□□□□ -0.2
CPS1-210ENST00000518043 DSG3P32926 999 aa13.75□□□□□ -0.21
CPS1-210ENST00000518043 FBLN2P98095 1184 aa13.64□□□□□ -0.23
CPS1-210ENST00000518043 MKRN4PQ13434 485 aaPredicted RBP13.64□□□□□ -0.23
CPS1-210ENST00000518043 FKBP8Q14318 412 aa13.62□□□□□ -0.23
CPS1-210ENST00000518043 ZBTB12Q9Y330 459 aaPredicted RBP13.6□□□□□ -0.23
CPS1-210ENST00000518043 ZCCHC6Q5VYS8 1495 aaKnown RBP13.58□□□□□ -0.24
CPS1-210ENST00000518043 ABCC9O60706 1549 aa13.5□□□□□ -0.25
CPS1-210ENST00000518043 SPDYE4A6NLX3 237 aa13.43□□□□□ -0.26
CPS1-210ENST00000518043 DCAF1Q9Y4B6 1507 aa13.4□□□□□ -0.26
CPS1-210ENST00000518043 OSCARQ8IYS5 282 aa13.35□□□□□ -0.27
CPS1-210ENST00000518043 MYO15BQ96JP2 1530 aa13.3□□□□□ -0.28
CPS1-210ENST00000518043 SPDYE2BA6NHP3 402 aa13.25□□□□□ -0.29
CPS1-210ENST00000518043 SPDYE6P0CI01 402 aa13.25□□□□□ -0.29
CPS1-210ENST00000518043 SPDYE2Q495Y8 402 aa13.25□□□□□ -0.29
CPS1-210ENST00000518043 ZNF692Q9BU19 519 aaPredicted RBP13.24□□□□□ -0.29
CPS1-210ENST00000518043 PROM2Q8N271 834 aa13.23□□□□□ -0.29
CPS1-210ENST00000518043 NACADO15069 1562 aa13.23□□□□□ -0.29
CPS1-210ENST00000518043 SSUH2Q9Y2M2 353 aa13.17□□□□□ -0.3
CPS1-210ENST00000518043 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
CPS1-210ENST00000518043 RB1CC1Q8TDY2 1594 aa13.14□□□□□ -0.31
CPS1-210ENST00000518043 RBM42Q9BTD8 480 aaKnown RBP13.09□□□□□ -0.31
CPS1-210ENST00000518043 FBXO3Q9UK99 471 aa13.08□□□□□ -0.32
CPS1-210ENST00000518043 PABPN1Q86U42 306 aaKnown RBP eCLIP13.07□□□□□ -0.32
CPS1-210ENST00000518043 SCRIBQ14160 1630 aa13□□□□□ -0.33
CPS1-210ENST00000518043 UNC13AQ9UPW8 1703 aa12.99□□□□□ -0.33
CPS1-210ENST00000518043 AKT1S1Q96B36 256 aa12.97□□□□□ -0.33
CPS1-210ENST00000518043 SHROOM4Q9ULL8 1493 aa12.95□□□□□ -0.34
CPS1-210ENST00000518043 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
CPS1-210ENST00000518043 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
CPS1-210ENST00000518043 REM2Q8IYK8 340 aaPredicted RBP12.85□□□□□ -0.35
CPS1-210ENST00000518043 BICRAQ9NZM4 1560 aa12.85□□□□□ -0.35
CPS1-210ENST00000518043 SPDYE1Q8NFV5 336 aaPredicted RBP12.82□□□□□ -0.36
CPS1-210ENST00000518043 CLEC11AQ9Y240 323 aa12.76□□□□□ -0.37
CPS1-210ENST00000518043 AMER1Q5JTC6 1135 aaPredicted RBP12.74□□□□□ -0.37
CPS1-210ENST00000518043 IFNLR1Q8IU57 520 aaPredicted RBP12.74□□□□□ -0.37
CPS1-210ENST00000518043 PITPNM1O00562 1244 aa12.71□□□□□ -0.37
CPS1-210ENST00000518043 MIER1Q8N108 512 aa12.71□□□□□ -0.37
CPS1-210ENST00000518043 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.37
CPS1-210ENST00000518043 RTN4Q9NQC3 1192 aaKnown RBP12.71□□□□□ -0.37
CPS1-210ENST00000518043 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
CPS1-210ENST00000518043 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
CPS1-210ENST00000518043 PLEKHG5O94827 1062 aa12.63□□□□□ -0.39
CPS1-210ENST00000518043 CECR2Q9BXF3 1484 aa12.58□□□□□ -0.4
CPS1-210ENST00000518043 ZBTB47Q9UFB7 747 aaPredicted RBP12.56□□□□□ -0.4
CPS1-210ENST00000518043 SPOCK2Q92563 424 aa12.55□□□□□ -0.4
CPS1-210ENST00000518043 CREBZFQ9NS37 354 aa12.55□□□□□ -0.4
CPS1-210ENST00000518043 MROH2BQ7Z745 1585 aa12.5□□□□□ -0.41
CPS1-210ENST00000518043 SMARCA4P51532 1647 aa12.48□□□□□ -0.41
CPS1-210ENST00000518043 BAZ1AQ9NRL2 1556 aaPredicted RBP12.47□□□□□ -0.41
CPS1-210ENST00000518043 CHRDL2Q6WN34 429 aa12.47□□□□□ -0.41
CPS1-210ENST00000518043 RSF1Q96T23 1441 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms