RNA–Protein interactions for RNA: ENST00000511105.1

PTPN13-208, Transcript of protein tyrosine phosphatase, non-receptor type 13, human

TSL 3

Gene PTPN13, Length 645 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN13-208	ENST00000511105	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.57	■■□□□ 1.04
PTPN13-208	ENST00000511105	CHIC1	Q5VXU3	224 aa		20.56	■□□□□ 0.88
PTPN13-208	ENST00000511105	SENP3	Q9H4L4	574 aa	Predicted RBP	18.28	■□□□□ 0.52
PTPN13-208	ENST00000511105	PHF23	Q9BUL5	403 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPN13-208	ENST00000511105	FOXD1	Q16676	465 aa		17.12	■□□□□ 0.33
PTPN13-208	ENST00000511105	POTED	Q86YR6	584 aa		16.85	■□□□□ 0.29
PTPN13-208	ENST00000511105	PLPPR3	Q6T4P5	718 aa		16.49	■□□□□ 0.23
PTPN13-208	ENST00000511105	MSH5	O43196	834 aa		16.23	■□□□□ 0.19
PTPN13-208	ENST00000511105	PPP6R1	Q9UPN7	881 aa		16.21	■□□□□ 0.19
PTPN13-208	ENST00000511105	ADRA2B	P18089	450 aa		16.17	■□□□□ 0.18
PTPN13-208	ENST00000511105	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.97	■□□□□ 0.15
PTPN13-208	ENST00000511105	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.84	□□□□□ -0.03
PTPN13-208	ENST00000511105	PPP4R3CP	Q6ZMV5	832 aa		14.57	□□□□□ -0.08
PTPN13-208	ENST00000511105	SCAF1	Q9H7N4	1312 aa	Known RBP	14.56	□□□□□ -0.08
PTPN13-208	ENST00000511105	DMRT2	Q9Y5R5	561 aa		14.48	□□□□□ -0.09
PTPN13-208	ENST00000511105	CACNB1	Q02641	598 aa	Predicted RBP	14.27	□□□□□ -0.13
PTPN13-208	ENST00000511105	CNKSR2	Q8WXI2	1034 aa		14.17	□□□□□ -0.14
PTPN13-208	ENST00000511105	DCAF8L1	A6NGE4	600 aa		14.06	□□□□□ -0.16
PTPN13-208	ENST00000511105	HOXD11	P31277	338 aa	Predicted RBP	14.01	□□□□□ -0.17
PTPN13-208	ENST00000511105	NCBP3	Q53F19	620 aa	Known RBP	13.96	□□□□□ -0.17
PTPN13-208	ENST00000511105	RNF216	Q9NWF9	866 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN13-208	ENST00000511105	NPM3	O75607	178 aa	Known RBP	13.89	□□□□□ -0.19
PTPN13-208	ENST00000511105	KCNA4	P22459	653 aa		13.87	□□□□□ -0.19
PTPN13-208	ENST00000511105	RNF39	Q9H2S5	420 aa		13.81	□□□□□ -0.2
PTPN13-208	ENST00000511105	C1QBP	Q07021	282 aa	Known RBP	13.57	□□□□□ -0.24
PTPN13-208	ENST00000511105	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
PTPN13-208	ENST00000511105	DNAJC5B	Q9UF47	199 aa		13.31	□□□□□ -0.28
PTPN13-208	ENST00000511105	SLC4A2	P04920	1241 aa		13.23	□□□□□ -0.29
PTPN13-208	ENST00000511105		U3KPZ7	1027 aa	Predicted RBP	13.18	□□□□□ -0.3
PTPN13-208	ENST00000511105	POTEH	Q6S545	545 aa		13.08	□□□□□ -0.32
PTPN13-208	ENST00000511105	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.08	□□□□□ -0.32
PTPN13-208	ENST00000511105	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.01	□□□□□ -0.33
PTPN13-208	ENST00000511105	CAPN15	O75808	1086 aa		12.94	□□□□□ -0.34
PTPN13-208	ENST00000511105	TRH	P20396	242 aa	Predicted RBP	12.82	□□□□□ -0.36
PTPN13-208	ENST00000511105	ZBTB22	O15209	634 aa		12.79	□□□□□ -0.36
PTPN13-208	ENST00000511105	DSG3	P32926	999 aa		12.75	□□□□□ -0.37
PTPN13-208	ENST00000511105	FOXD4L1	Q9NU39	408 aa		12.75	□□□□□ -0.37
PTPN13-208	ENST00000511105	ABCB7	O75027	752 aa		12.74	□□□□□ -0.37
PTPN13-208	ENST00000511105	MYCN	P04198	464 aa	Predicted RBP	12.73	□□□□□ -0.37
PTPN13-208	ENST00000511105	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.7	□□□□□ -0.38
PTPN13-208	ENST00000511105	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.7	□□□□□ -0.38
PTPN13-208	ENST00000511105	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.69	□□□□□ -0.38
PTPN13-208	ENST00000511105	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.64	□□□□□ -0.39
PTPN13-208	ENST00000511105	APLP2	Q06481	763 aa		12.62	□□□□□ -0.39
PTPN13-208	ENST00000511105	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.6	□□□□□ -0.39
PTPN13-208	ENST00000511105	POLA2	Q14181	598 aa		12.5	□□□□□ -0.41
PTPN13-208	ENST00000511105	EHMT2	Q96KQ7	1210 aa		12.42	□□□□□ -0.42
PTPN13-208	ENST00000511105	CSRNP3	Q8WYN3	585 aa		12.37	□□□□□ -0.43
PTPN13-208	ENST00000511105	ATXN8OS	P0DMR3	200 aa		12.24	□□□□□ -0.45
PTPN13-208	ENST00000511105	RBM42	Q9BTD8	480 aa	Known RBP	12.14	□□□□□ -0.47
PTPN13-208	ENST00000511105	CHRDL2	Q6WN34	429 aa		12.12	□□□□□ -0.47
PTPN13-208	ENST00000511105	OSCAR	Q8IYS5	282 aa		12.08	□□□□□ -0.48
PTPN13-208	ENST00000511105	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.03	□□□□□ -0.48
PTPN13-208	ENST00000511105	MKRN4P	Q13434	485 aa	Predicted RBP	11.99	□□□□□ -0.49
PTPN13-208	ENST00000511105	SP7	Q8TDD2	431 aa	Predicted RBP	11.99	□□□□□ -0.49
PTPN13-208	ENST00000511105	FBLN2	P98095	1184 aa		11.94	□□□□□ -0.5
PTPN13-208	ENST00000511105	AKT1S1	Q96B36	256 aa		11.85	□□□□□ -0.51
PTPN13-208	ENST00000511105	REM2	Q8IYK8	340 aa	Predicted RBP	11.83	□□□□□ -0.52
PTPN13-208	ENST00000511105	ZNF692	Q9BU19	519 aa	Predicted RBP	11.76	□□□□□ -0.53
PTPN13-208	ENST00000511105	SPDYE2B	A6NHP3	402 aa		11.75	□□□□□ -0.53
PTPN13-208	ENST00000511105	SPDYE6	P0CI01	402 aa		11.75	□□□□□ -0.53
PTPN13-208	ENST00000511105	SPDYE2	Q495Y8	402 aa		11.75	□□□□□ -0.53
PTPN13-208	ENST00000511105	PITPNM1	O00562	1244 aa		11.72	□□□□□ -0.53
PTPN13-208	ENST00000511105	PIP4P2	Q8N4L2	257 aa		11.71	□□□□□ -0.53
PTPN13-208	ENST00000511105	HAX1	O00165	279 aa		11.65	□□□□□ -0.54
PTPN13-208	ENST00000511105	CLEC11A	Q9Y240	323 aa		11.65	□□□□□ -0.54
PTPN13-208	ENST00000511105	SSUH2	Q9Y2M2	353 aa		11.63	□□□□□ -0.55
PTPN13-208	ENST00000511105	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.61	□□□□□ -0.55
PTPN13-208	ENST00000511105	FXR2	P51116	673 aa	Known RBP eCLIP	11.55	□□□□□ -0.56
PTPN13-208	ENST00000511105	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.51	□□□□□ -0.57
PTPN13-208	ENST00000511105	SPDYE4	A6NLX3	237 aa		11.5	□□□□□ -0.57
PTPN13-208	ENST00000511105	EVX2	Q03828	476 aa		11.49	□□□□□ -0.57
PTPN13-208	ENST00000511105	CHADL	Q6NUI6	762 aa		11.44	□□□□□ -0.58
PTPN13-208	ENST00000511105	PRKAR2A	P13861	404 aa	Known RBP	11.43	□□□□□ -0.58
PTPN13-208	ENST00000511105	PRR29	P0C7W0	189 aa		11.41	□□□□□ -0.58
PTPN13-208	ENST00000511105	LHX8	Q68G74	356 aa		11.24	□□□□□ -0.61
PTPN13-208	ENST00000511105	FKBP8	Q14318	412 aa		11.22	□□□□□ -0.61
PTPN13-208	ENST00000511105	C19orf67	A6NJJ6	358 aa		11.21	□□□□□ -0.61
PTPN13-208	ENST00000511105	CREBZF	Q9NS37	354 aa		11.19	□□□□□ -0.62
PTPN13-208	ENST00000511105	GABBR2	O75899	941 aa		11.18	□□□□□ -0.62
PTPN13-208	ENST00000511105	STAG3	Q9UJ98	1225 aa		11.18	□□□□□ -0.62
PTPN13-208	ENST00000511105	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.17	□□□□□ -0.62
PTPN13-208	ENST00000511105	PROM2	Q8N271	834 aa		11.14	□□□□□ -0.63
PTPN13-208	ENST00000511105	CD44	P16070	742 aa	Known RBP	11.05	□□□□□ -0.64
PTPN13-208	ENST00000511105	MNX1	P50219	401 aa	Predicted RBP	11	□□□□□ -0.65
PTPN13-208	ENST00000511105	MIER1	Q8N108	512 aa		11	□□□□□ -0.65
PTPN13-208	ENST00000511105	PLSCR2	Q9NRY7	297 aa		10.98	□□□□□ -0.65
PTPN13-208	ENST00000511105	ZRANB1	Q9UGI0	708 aa		10.97	□□□□□ -0.65
PTPN13-208	ENST00000511105	POTEI	P0CG38	1075 aa		10.96	□□□□□ -0.65
PTPN13-208	ENST00000511105	NISCH	Q9Y2I1	1504 aa		10.94	□□□□□ -0.66
PTPN13-208	ENST00000511105	SLC24A1	O60721	1099 aa		10.92	□□□□□ -0.66
PTPN13-208	ENST00000511105	PLCD3	Q8N3E9	789 aa		10.91	□□□□□ -0.66
PTPN13-208	ENST00000511105	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.9	□□□□□ -0.66
PTPN13-208	ENST00000511105	NPM1	P06748	294 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
PTPN13-208	ENST00000511105	PHF12	Q96QT6	1004 aa		10.88	□□□□□ -0.67
PTPN13-208	ENST00000511105	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.88	□□□□□ -0.67
PTPN13-208	ENST00000511105	RTN4	Q9NQC3	1192 aa	Known RBP	10.86	□□□□□ -0.67
PTPN13-208	ENST00000511105	PLEKHG5	O94827	1062 aa		10.81	□□□□□ -0.68
PTPN13-208	ENST00000511105	ZNF579	Q8NAF0	562 aa	Known RBP	10.81	□□□□□ -0.68
PTPN13-208	ENST00000511105	GALR2	O43603	387 aa	Predicted RBP	10.8	□□□□□ -0.68

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