RNA–Protein interactions for RNA: ENST00000508899.1

FREM3-202, Transcript of FRAS1 related extracellular matrix 3, humanhuman

TSL 5

Gene FREM3, Length 405 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3-202ENST00000508899 AEBP2Q6ZN18 517 aaPredicted RBP18.03■□□□□ 0.48
FREM3-202ENST00000508899 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
FREM3-202ENST00000508899 PHF23Q9BUL5 403 aaPredicted RBP15.34■□□□□ 0.05
FREM3-202ENST00000508899 SENP3Q9H4L4 574 aaPredicted RBP15.2■□□□□ 0.02
FREM3-202ENST00000508899 FOXD1Q16676 465 aa14.2□□□□□ -0.14
FREM3-202ENST00000508899 PLPPR3Q6T4P5 718 aa13.99□□□□□ -0.17
FREM3-202ENST00000508899 PPP6R1Q9UPN7 881 aa13.58□□□□□ -0.24
FREM3-202ENST00000508899 ADRA2BP18089 450 aa13.5□□□□□ -0.25
FREM3-202ENST00000508899 PIAS4Q8N2W9 510 aaPredicted RBP13.27□□□□□ -0.29
FREM3-202ENST00000508899 MSH5O43196 834 aa13.06□□□□□ -0.32
FREM3-202ENST00000508899 NISCHQ9Y2I1 1504 aa12.57□□□□□ -0.4
FREM3-202ENST00000508899 PPP4R3CPQ6ZMV5 832 aa12.33□□□□□ -0.44
FREM3-202ENST00000508899 MAPK8IP2Q13387 824 aaPredicted RBP12.32□□□□□ -0.44
FREM3-202ENST00000508899 POTEDQ86YR6 584 aa12.24□□□□□ -0.45
FREM3-202ENST00000508899 SCAF1Q9H7N4 1312 aaKnown RBP12.22□□□□□ -0.45
FREM3-202ENST00000508899 DMRT2Q9Y5R5 561 aa12.15□□□□□ -0.46
FREM3-202ENST00000508899 CNKSR2Q8WXI2 1034 aa12.01□□□□□ -0.49
FREM3-202ENST00000508899 KCNA4P22459 653 aa11.9□□□□□ -0.5
FREM3-202ENST00000508899 HOXD11P31277 338 aaPredicted RBP11.87□□□□□ -0.51
FREM3-202ENST00000508899 NCBP3Q53F19 620 aaKnown RBP11.87□□□□□ -0.51
FREM3-202ENST00000508899 NPM3O75607 178 aaKnown RBP11.82□□□□□ -0.52
FREM3-202ENST00000508899 RNF216Q9NWF9 866 aaPredicted RBP11.82□□□□□ -0.52
FREM3-202ENST00000508899 DNAJC5BQ9UF47 199 aa11.57□□□□□ -0.56
FREM3-202ENST00000508899 DCAF8L1A6NGE4 600 aa11.5□□□□□ -0.57
FREM3-202ENST00000508899 RNF39Q9H2S5 420 aa11.25□□□□□ -0.61
FREM3-202ENST00000508899 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
FREM3-202ENST00000508899 SLC4A1APQ9BWU0 796 aaKnown RBP11.24□□□□□ -0.61
FREM3-202ENST00000508899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.18□□□□□ -0.62
FREM3-202ENST00000508899 U3KPZ7 1027 aaPredicted RBP11.1□□□□□ -0.63
FREM3-202ENST00000508899 C1QBPQ07021 282 aaKnown RBP11.05□□□□□ -0.64
FREM3-202ENST00000508899 ZBTB22O15209 634 aa11.01□□□□□ -0.65
FREM3-202ENST00000508899 CACNB1Q02641 598 aaPredicted RBP10.97□□□□□ -0.65
FREM3-202ENST00000508899 FOXD4L1Q9NU39 408 aa10.95□□□□□ -0.66
FREM3-202ENST00000508899 CCDC180Q9P1Z9 1646 aa10.93□□□□□ -0.66
FREM3-202ENST00000508899 MYCNP04198 464 aaPredicted RBP10.87□□□□□ -0.67
FREM3-202ENST00000508899 SPINK5Q9NQ38 1064 aaPredicted RBP10.83□□□□□ -0.68
FREM3-202ENST00000508899 CSRNP3Q8WYN3 585 aa10.78□□□□□ -0.68
FREM3-202ENST00000508899 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.77□□□□□ -0.69
FREM3-202ENST00000508899 HNRNPUL2Q1KMD3 747 aaKnown RBP10.77□□□□□ -0.69
FREM3-202ENST00000508899 SAMD1Q6SPF0 538 aaPredicted RBP10.76□□□□□ -0.69
FREM3-202ENST00000508899 ZCCHC6Q5VYS8 1495 aaKnown RBP10.73□□□□□ -0.69
FREM3-202ENST00000508899 EHMT2Q96KQ7 1210 aa10.72□□□□□ -0.69
FREM3-202ENST00000508899 CAPN15O75808 1086 aa10.69□□□□□ -0.7
FREM3-202ENST00000508899 ATF5Q9Y2D1 282 aaPredicted RBP10.69□□□□□ -0.7
FREM3-202ENST00000508899 DSG3P32926 999 aa10.65□□□□□ -0.7
FREM3-202ENST00000508899 APLP2Q06481 763 aa10.65□□□□□ -0.7
FREM3-202ENST00000508899 TRHP20396 242 aaPredicted RBP10.61□□□□□ -0.71
FREM3-202ENST00000508899 ZNF219Q9P2Y4 722 aaPredicted RBP10.61□□□□□ -0.71
FREM3-202ENST00000508899 ATXN8OSP0DMR3 200 aa10.58□□□□□ -0.72
FREM3-202ENST00000508899 DCAF1Q9Y4B6 1507 aa10.53□□□□□ -0.72
FREM3-202ENST00000508899 ABCB7O75027 752 aa10.52□□□□□ -0.73
FREM3-202ENST00000508899 POLA2Q14181 598 aa10.44□□□□□ -0.74
FREM3-202ENST00000508899 SHROOM4Q9ULL8 1493 aa10.27□□□□□ -0.77
FREM3-202ENST00000508899 MYO15BQ96JP2 1530 aa10.26□□□□□ -0.77
FREM3-202ENST00000508899 MKRN4PQ13434 485 aaPredicted RBP10.22□□□□□ -0.77
FREM3-202ENST00000508899 ZBTB12Q9Y330 459 aaPredicted RBP10.19□□□□□ -0.78
FREM3-202ENST00000508899 ABCC9O60706 1549 aa10.18□□□□□ -0.78
FREM3-202ENST00000508899 OSCARQ8IYS5 282 aa10.11□□□□□ -0.79
FREM3-202ENST00000508899 FBLN2P98095 1184 aa10.08□□□□□ -0.8
FREM3-202ENST00000508899 RBM42Q9BTD8 480 aaKnown RBP10.05□□□□□ -0.8
FREM3-202ENST00000508899 SUPT5HO00267 1087 aaKnown RBP10.02□□□□□ -0.81
FREM3-202ENST00000508899 SPDYE2BA6NHP3 402 aa9.96□□□□□ -0.82
FREM3-202ENST00000508899 SPDYE6P0CI01 402 aa9.96□□□□□ -0.82
FREM3-202ENST00000508899 SPDYE2Q495Y8 402 aa9.96□□□□□ -0.82
FREM3-202ENST00000508899 NACADO15069 1562 aa9.96□□□□□ -0.82
FREM3-202ENST00000508899 AKT1S1Q96B36 256 aa9.94□□□□□ -0.82
FREM3-202ENST00000508899 SSUH2Q9Y2M2 353 aa9.93□□□□□ -0.82
FREM3-202ENST00000508899 SCRIBQ14160 1630 aa9.91□□□□□ -0.82
FREM3-202ENST00000508899 RB1CC1Q8TDY2 1594 aa9.89□□□□□ -0.83
FREM3-202ENST00000508899 ZNF692Q9BU19 519 aaPredicted RBP9.87□□□□□ -0.83
FREM3-202ENST00000508899 RSF1Q96T23 1441 aaPredicted RBP9.87□□□□□ -0.83
FREM3-202ENST00000508899 REM2Q8IYK8 340 aaPredicted RBP9.86□□□□□ -0.83
FREM3-202ENST00000508899 EIF4G1Q04637 1599 aaKnown RBP9.82□□□□□ -0.84
FREM3-202ENST00000508899 SPDYE4A6NLX3 237 aa9.8□□□□□ -0.84
FREM3-202ENST00000508899 BAZ1AQ9NRL2 1556 aaPredicted RBP9.78□□□□□ -0.84
FREM3-202ENST00000508899 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
FREM3-202ENST00000508899 PABPN1Q86U42 306 aaKnown RBP eCLIP9.76□□□□□ -0.85
FREM3-202ENST00000508899 DCAF8L2P0C7V8 631 aa9.75□□□□□ -0.85
FREM3-202ENST00000508899 HRCP23327 699 aa9.74□□□□□ -0.85
FREM3-202ENST00000508899 CHRDL2Q6WN34 429 aa9.74□□□□□ -0.85
FREM3-202ENST00000508899 PROM2Q8N271 834 aa9.74□□□□□ -0.85
FREM3-202ENST00000508899 MROH2BQ7Z745 1585 aa9.71□□□□□ -0.86
FREM3-202ENST00000508899 UNC13AQ9UPW8 1703 aa9.69□□□□□ -0.86
FREM3-202ENST00000508899 SPDYE1Q8NFV5 336 aaPredicted RBP9.68□□□□□ -0.86
FREM3-202ENST00000508899 WIZO95785 1651 aa9.67□□□□□ -0.86
FREM3-202ENST00000508899 CECR2Q9BXF3 1484 aa9.66□□□□□ -0.86
FREM3-202ENST00000508899 FKBP8Q14318 412 aa9.66□□□□□ -0.86
FREM3-202ENST00000508899 FXR2P51116 673 aaKnown RBP eCLIP9.64□□□□□ -0.87
FREM3-202ENST00000508899 TOP2AP11388 1531 aaKnown RBP9.63□□□□□ -0.87
FREM3-202ENST00000508899 POTEHQ6S545 545 aa9.63□□□□□ -0.87
FREM3-202ENST00000508899 SMARCA4P51532 1647 aa9.63□□□□□ -0.87
FREM3-202ENST00000508899 PIP4P2Q8N4L2 257 aa9.62□□□□□ -0.87
FREM3-202ENST00000508899 CLEC11AQ9Y240 323 aa9.61□□□□□ -0.87
FREM3-202ENST00000508899 PEG3Q9GZU2 1588 aa9.58□□□□□ -0.88
FREM3-202ENST00000508899 SMARCA2P51531 1590 aa9.56□□□□□ -0.88
FREM3-202ENST00000508899 PRR29P0C7W0 189 aa9.51□□□□□ -0.89
FREM3-202ENST00000508899 PCGF6Q9BYE7 350 aa9.51□□□□□ -0.89
FREM3-202ENST00000508899 STAG3Q9UJ98 1225 aa9.51□□□□□ -0.89
FREM3-202ENST00000508899 BICRAQ9NZM4 1560 aa9.5□□□□□ -0.89
FREM3-202ENST00000508899 TRIM26Q12899 539 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms