RNA–Protein interactions for RNA: ENST00000503274.1

NIPBL-203, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 789 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-203ENST00000503274 AEBP2Q6ZN18 517 aaPredicted RBP31.09■■■□□ 2.57
NIPBL-203ENST00000503274 CHIC1Q5VXU3 224 aa29.79■■■□□ 2.36
NIPBL-203ENST00000503274 SENP3Q9H4L4 574 aaPredicted RBP26.36■■□□□ 1.81
NIPBL-203ENST00000503274 PHF23Q9BUL5 403 aaPredicted RBP26.2■■□□□ 1.78
NIPBL-203ENST00000503274 FOXD1Q16676 465 aa24.6■■□□□ 1.53
NIPBL-203ENST00000503274 PLPPR3Q6T4P5 718 aa24.2■■□□□ 1.46
NIPBL-203ENST00000503274 PPP6R1Q9UPN7 881 aa23.3■■□□□ 1.32
NIPBL-203ENST00000503274 ADRA2BP18089 450 aa23.23■■□□□ 1.31
NIPBL-203ENST00000503274 PIAS4Q8N2W9 510 aaPredicted RBP23.05■■□□□ 1.28
NIPBL-203ENST00000503274 MSH5O43196 834 aa23.01■■□□□ 1.27
NIPBL-203ENST00000503274 POTEDQ86YR6 584 aa22.6■■□□□ 1.21
NIPBL-203ENST00000503274 PPP4R3CPQ6ZMV5 832 aa21.34■■□□□ 1.01
NIPBL-203ENST00000503274 MAPK8IP2Q13387 824 aaPredicted RBP21.25■□□□□ 0.99
NIPBL-203ENST00000503274 SCAF1Q9H7N4 1312 aaKnown RBP21.12■□□□□ 0.97
NIPBL-203ENST00000503274 KCNA4P22459 653 aa20.99■□□□□ 0.95
NIPBL-203ENST00000503274 DMRT2Q9Y5R5 561 aa20.98■□□□□ 0.95
NIPBL-203ENST00000503274 NCBP3Q53F19 620 aaKnown RBP20.84■□□□□ 0.93
NIPBL-203ENST00000503274 CNKSR2Q8WXI2 1034 aa20.71■□□□□ 0.91
NIPBL-203ENST00000503274 NPM3O75607 178 aaKnown RBP20.51■□□□□ 0.87
NIPBL-203ENST00000503274 HOXD11P31277 338 aaPredicted RBP20.35■□□□□ 0.85
NIPBL-203ENST00000503274 RNF216Q9NWF9 866 aaPredicted RBP20.28■□□□□ 0.84
NIPBL-203ENST00000503274 DCAF8L1A6NGE4 600 aa20.12■□□□□ 0.81
NIPBL-203ENST00000503274 SLC4A1APQ9BWU0 796 aaKnown RBP20.02■□□□□ 0.8
NIPBL-203ENST00000503274 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
NIPBL-203ENST00000503274 CACNB1Q02641 598 aaPredicted RBP19.85■□□□□ 0.77
NIPBL-203ENST00000503274 EHMT2Q96KQ7 1210 aa19.6■□□□□ 0.73
NIPBL-203ENST00000503274 RNF39Q9H2S5 420 aa19.58■□□□□ 0.72
NIPBL-203ENST00000503274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.37■□□□□ 0.69
NIPBL-203ENST00000503274 SLC4A2P04920 1241 aa19.33■□□□□ 0.68
NIPBL-203ENST00000503274 C1QBPQ07021 282 aaKnown RBP19.32■□□□□ 0.68
NIPBL-203ENST00000503274 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
NIPBL-203ENST00000503274 ZBTB22O15209 634 aa19.3■□□□□ 0.68
NIPBL-203ENST00000503274 FOXD4L1Q9NU39 408 aa19.28■□□□□ 0.68
NIPBL-203ENST00000503274 U3KPZ7 1027 aaPredicted RBP19.06■□□□□ 0.64
NIPBL-203ENST00000503274 MYCNP04198 464 aaPredicted RBP18.95■□□□□ 0.62
NIPBL-203ENST00000503274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.74■□□□□ 0.59
NIPBL-203ENST00000503274 HNRNPUL2Q1KMD3 747 aaKnown RBP18.74■□□□□ 0.59
NIPBL-203ENST00000503274 SPINK5Q9NQ38 1064 aaPredicted RBP18.7■□□□□ 0.58
NIPBL-203ENST00000503274 SAMD1Q6SPF0 538 aaPredicted RBP18.67■□□□□ 0.58
NIPBL-203ENST00000503274 ATXN8OSP0DMR3 200 aa18.61■□□□□ 0.57
NIPBL-203ENST00000503274 CAPN15O75808 1086 aa18.59■□□□□ 0.57
NIPBL-203ENST00000503274 APLP2Q06481 763 aa18.51■□□□□ 0.55
NIPBL-203ENST00000503274 DSG3P32926 999 aa18.42■□□□□ 0.54
NIPBL-203ENST00000503274 ATF5Q9Y2D1 282 aaPredicted RBP18.42■□□□□ 0.54
NIPBL-203ENST00000503274 TRHP20396 242 aaPredicted RBP18.4■□□□□ 0.54
NIPBL-203ENST00000503274 ZNF219Q9P2Y4 722 aaPredicted RBP18.31■□□□□ 0.52
NIPBL-203ENST00000503274 ABCB7O75027 752 aa18.25■□□□□ 0.51
NIPBL-203ENST00000503274 POLA2Q14181 598 aa17.97■□□□□ 0.47
NIPBL-203ENST00000503274 POTEHQ6S545 545 aa17.71■□□□□ 0.43
NIPBL-203ENST00000503274 ZBTB12Q9Y330 459 aaPredicted RBP17.68■□□□□ 0.42
NIPBL-203ENST00000503274 FBLN2P98095 1184 aa17.67■□□□□ 0.42
NIPBL-203ENST00000503274 MKRN4PQ13434 485 aaPredicted RBP17.63■□□□□ 0.41
NIPBL-203ENST00000503274 RBM42Q9BTD8 480 aaKnown RBP17.53■□□□□ 0.4
NIPBL-203ENST00000503274 FKBP8Q14318 412 aa17.46■□□□□ 0.39
NIPBL-203ENST00000503274 OSCARQ8IYS5 282 aa17.42■□□□□ 0.38
NIPBL-203ENST00000503274 SPDYE4A6NLX3 237 aa17.32■□□□□ 0.36
NIPBL-203ENST00000503274 SPDYE2BA6NHP3 402 aa17.21■□□□□ 0.35
NIPBL-203ENST00000503274 SPDYE6P0CI01 402 aa17.21■□□□□ 0.35
NIPBL-203ENST00000503274 SPDYE2Q495Y8 402 aa17.21■□□□□ 0.35
NIPBL-203ENST00000503274 AKT1S1Q96B36 256 aa17.19■□□□□ 0.34
NIPBL-203ENST00000503274 CHRDL2Q6WN34 429 aa17.17■□□□□ 0.34
NIPBL-203ENST00000503274 ZNF692Q9BU19 519 aaPredicted RBP17.16■□□□□ 0.34
NIPBL-203ENST00000503274 SSUH2Q9Y2M2 353 aa17.07■□□□□ 0.32
NIPBL-203ENST00000503274 REM2Q8IYK8 340 aaPredicted RBP17.06■□□□□ 0.32
NIPBL-203ENST00000503274 PROM2Q8N271 834 aa17.04■□□□□ 0.32
NIPBL-203ENST00000503274 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
NIPBL-203ENST00000503274 PITPNM1O00562 1244 aa16.9■□□□□ 0.3
NIPBL-203ENST00000503274 FBXO3Q9UK99 471 aa16.83■□□□□ 0.28
NIPBL-203ENST00000503274 PIP4P2Q8N4L2 257 aa16.72■□□□□ 0.27
NIPBL-203ENST00000503274 STAG3Q9UJ98 1225 aa16.7■□□□□ 0.26
NIPBL-203ENST00000503274 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
NIPBL-203ENST00000503274 CLEC11AQ9Y240 323 aa16.69■□□□□ 0.26
NIPBL-203ENST00000503274 FXR2P51116 673 aaKnown RBP eCLIP16.66■□□□□ 0.262e-6■■□□□ 12.1
NIPBL-203ENST00000503274 VASPP50552 380 aaPredicted RBP16.57■□□□□ 0.24
NIPBL-203ENST00000503274 SP7Q8TDD2 431 aaPredicted RBP16.56■□□□□ 0.24
NIPBL-203ENST00000503274 HAX1O00165 279 aa16.51■□□□□ 0.23
NIPBL-203ENST00000503274 PRR29P0C7W0 189 aa16.46■□□□□ 0.23
NIPBL-203ENST00000503274 PRKAR2AP13861 404 aaKnown RBP16.45■□□□□ 0.22
NIPBL-203ENST00000503274 MIER1Q8N108 512 aa16.43■□□□□ 0.22
NIPBL-203ENST00000503274 PLCD3Q8N3E9 789 aa16.41■□□□□ 0.22
NIPBL-203ENST00000503274 CHADLQ6NUI6 762 aa16.39■□□□□ 0.21
NIPBL-203ENST00000503274 IFNLR1Q8IU57 520 aaPredicted RBP16.35■□□□□ 0.21
NIPBL-203ENST00000503274 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
NIPBL-203ENST00000503274 KLHL34Q8N239 644 aa16.28■□□□□ 0.2
NIPBL-203ENST00000503274 CREBZFQ9NS37 354 aa16.27■□□□□ 0.2
NIPBL-203ENST00000503274 ZBTB47Q9UFB7 747 aaPredicted RBP16.23■□□□□ 0.19
NIPBL-203ENST00000503274 EVX2Q03828 476 aa16.21■□□□□ 0.19
NIPBL-203ENST00000503274 AMER1Q5JTC6 1135 aaPredicted RBP16.16■□□□□ 0.18
NIPBL-203ENST00000503274 SPOCK2Q92563 424 aa16.15■□□□□ 0.18
NIPBL-203ENST00000503274 FARP1Q9Y4F1 1045 aaPredicted RBP16.12■□□□□ 0.17
NIPBL-203ENST00000503274 C19orf67A6NJJ6 358 aa16.11■□□□□ 0.17
NIPBL-203ENST00000503274 MNX1P50219 401 aaPredicted RBP16.11■□□□□ 0.17
NIPBL-203ENST00000503274 RTN4Q9NQC3 1192 aaKnown RBP16.09■□□□□ 0.17
NIPBL-203ENST00000503274 NPM1P06748 294 aaKnown RBP eCLIP16.02■□□□□ 0.16
NIPBL-203ENST00000503274 NUBP1P53384 320 aa15.97■□□□□ 0.15
NIPBL-203ENST00000503274 CD44P16070 742 aaKnown RBP15.95■□□□□ 0.14
NIPBL-203ENST00000503274 CIZ1Q9ULV3 898 aaPredicted RBP15.88■□□□□ 0.13
NIPBL-203ENST00000503274 GABBR2O75899 941 aa15.87■□□□□ 0.13
NIPBL-203ENST00000503274 RASEFQ8IZ41 740 aa15.86■□□□□ 0.13
NIPBL-203ENST00000503274 PKD2Q13563 968 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms