RNA–Protein interactions for RNA: ENST00000493507.5

CCNB3-208, Transcript of cyclin B3, humanhuman

TSL 1 (best)

Gene CCNB3, Length 340 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNB3-208ENST00000493507 AEBP2Q6ZN18 517 aaPredicted RBP22.9■■□□□ 1.26
CCNB3-208ENST00000493507 CHIC1Q5VXU3 224 aa22.54■■□□□ 1.2
CCNB3-208ENST00000493507 PHF23Q9BUL5 403 aaPredicted RBP19.8■□□□□ 0.76
CCNB3-208ENST00000493507 SENP3Q9H4L4 574 aaPredicted RBP19.51■□□□□ 0.71
CCNB3-208ENST00000493507 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
CCNB3-208ENST00000493507 FOXD1Q16676 465 aa18.02■□□□□ 0.48
CCNB3-208ENST00000493507 ADRA2BP18089 450 aa17.43■□□□□ 0.38
CCNB3-208ENST00000493507 PPP6R1Q9UPN7 881 aa17.42■□□□□ 0.38
CCNB3-208ENST00000493507 PIAS4Q8N2W9 510 aaPredicted RBP17.06■□□□□ 0.32
CCNB3-208ENST00000493507 MSH5O43196 834 aa16.64■□□□□ 0.25
CCNB3-208ENST00000493507 PPP4R3CPQ6ZMV5 832 aa16.2■□□□□ 0.18
CCNB3-208ENST00000493507 SCAF1Q9H7N4 1312 aaKnown RBP16.05■□□□□ 0.16
CCNB3-208ENST00000493507 KCNA4P22459 653 aa15.93■□□□□ 0.14
CCNB3-208ENST00000493507 NCBP3Q53F19 620 aaKnown RBP15.88■□□□□ 0.13
CCNB3-208ENST00000493507 MAPK8IP2Q13387 824 aaPredicted RBP15.76■□□□□ 0.11
CCNB3-208ENST00000493507 CNKSR2Q8WXI2 1034 aa15.75■□□□□ 0.11
CCNB3-208ENST00000493507 DMRT2Q9Y5R5 561 aa15.57■□□□□ 0.08
CCNB3-208ENST00000493507 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
CCNB3-208ENST00000493507 RNF216Q9NWF9 866 aaPredicted RBP15.4■□□□□ 0.06
CCNB3-208ENST00000493507 HOXD11P31277 338 aaPredicted RBP15.3■□□□□ 0.04
CCNB3-208ENST00000493507 SLC4A1APQ9BWU0 796 aaKnown RBP15.24■□□□□ 0.03
CCNB3-208ENST00000493507 DNAJC5BQ9UF47 199 aa15.15■□□□□ 0.02
CCNB3-208ENST00000493507 EHMT2Q96KQ7 1210 aa14.91□□□□□ -0.02
CCNB3-208ENST00000493507 DCAF8L1A6NGE4 600 aa14.89□□□□□ -0.03
CCNB3-208ENST00000493507 POTEDQ86YR6 584 aa14.87□□□□□ -0.03
CCNB3-208ENST00000493507 CSRNP3Q8WYN3 585 aa14.68□□□□□ -0.06
CCNB3-208ENST00000493507 FOXD4L1Q9NU39 408 aa14.67□□□□□ -0.06
CCNB3-208ENST00000493507 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
CCNB3-208ENST00000493507 ZBTB22O15209 634 aa14.63□□□□□ -0.07
CCNB3-208ENST00000493507 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.6□□□□□ -0.07
CCNB3-208ENST00000493507 MYCNP04198 464 aaPredicted RBP14.42□□□□□ -0.1
CCNB3-208ENST00000493507 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
CCNB3-208ENST00000493507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.29□□□□□ -0.12
CCNB3-208ENST00000493507 HNRNPUL2Q1KMD3 747 aaKnown RBP14.29□□□□□ -0.12
CCNB3-208ENST00000493507 RNF39Q9H2S5 420 aa14.24□□□□□ -0.13
CCNB3-208ENST00000493507 SAMD1Q6SPF0 538 aaPredicted RBP14.22□□□□□ -0.13
CCNB3-208ENST00000493507 ATXN8OSP0DMR3 200 aa14.2□□□□□ -0.14
CCNB3-208ENST00000493507 APLP2Q06481 763 aa14.13□□□□□ -0.15
CCNB3-208ENST00000493507 C1QBPQ07021 282 aaKnown RBP14.12□□□□□ -0.15
CCNB3-208ENST00000493507 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
CCNB3-208ENST00000493507 SPINK5Q9NQ38 1064 aaPredicted RBP13.87□□□□□ -0.19
CCNB3-208ENST00000493507 CAPN15O75808 1086 aa13.86□□□□□ -0.19
CCNB3-208ENST00000493507 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
CCNB3-208ENST00000493507 TRHP20396 242 aaPredicted RBP13.81□□□□□ -0.2
CCNB3-208ENST00000493507 CACNB1Q02641 598 aaPredicted RBP13.79□□□□□ -0.2
CCNB3-208ENST00000493507 POLA2Q14181 598 aa13.63□□□□□ -0.23
CCNB3-208ENST00000493507 DSG3P32926 999 aa13.58□□□□□ -0.24
CCNB3-208ENST00000493507 ABCB7O75027 752 aa13.57□□□□□ -0.24
CCNB3-208ENST00000493507 ZBTB12Q9Y330 459 aaPredicted RBP13.48□□□□□ -0.25
CCNB3-208ENST00000493507 FBLN2P98095 1184 aa13.46□□□□□ -0.25
CCNB3-208ENST00000493507 MKRN4PQ13434 485 aaPredicted RBP13.36□□□□□ -0.27
CCNB3-208ENST00000493507 FKBP8Q14318 412 aa13.28□□□□□ -0.28
CCNB3-208ENST00000493507 SPDYE4A6NLX3 237 aa13.17□□□□□ -0.3
CCNB3-208ENST00000493507 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
CCNB3-208ENST00000493507 SPDYE2BA6NHP3 402 aa13.09□□□□□ -0.31
CCNB3-208ENST00000493507 SPDYE6P0CI01 402 aa13.09□□□□□ -0.31
CCNB3-208ENST00000493507 SPDYE2Q495Y8 402 aa13.09□□□□□ -0.31
CCNB3-208ENST00000493507 ZNF692Q9BU19 519 aaPredicted RBP13.05□□□□□ -0.32
CCNB3-208ENST00000493507 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
CCNB3-208ENST00000493507 SSUH2Q9Y2M2 353 aa12.97□□□□□ -0.33
CCNB3-208ENST00000493507 PROM2Q8N271 834 aa12.96□□□□□ -0.33
CCNB3-208ENST00000493507 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCNB3-208ENST00000493507 FBXO3Q9UK99 471 aa12.86□□□□□ -0.35
CCNB3-208ENST00000493507 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
CCNB3-208ENST00000493507 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
CCNB3-208ENST00000493507 REM2Q8IYK8 340 aaPredicted RBP12.7□□□□□ -0.38
CCNB3-208ENST00000493507 SPDYE1Q8NFV5 336 aaPredicted RBP12.68□□□□□ -0.38
CCNB3-208ENST00000493507 VASPP50552 380 aaPredicted RBP12.62□□□□□ -0.39
CCNB3-208ENST00000493507 CLEC11AQ9Y240 323 aa12.58□□□□□ -0.4
CCNB3-208ENST00000493507 PITPNM1O00562 1244 aa12.53□□□□□ -0.4
CCNB3-208ENST00000493507 PRR29P0C7W0 189 aa12.51□□□□□ -0.41
CCNB3-208ENST00000493507 MIER1Q8N108 512 aa12.5□□□□□ -0.41
CCNB3-208ENST00000493507 PLCD3Q8N3E9 789 aa12.5□□□□□ -0.41
CCNB3-208ENST00000493507 PLEKHG5O94827 1062 aa12.48□□□□□ -0.41
CCNB3-208ENST00000493507 IFNLR1Q8IU57 520 aaPredicted RBP12.43□□□□□ -0.42
CCNB3-208ENST00000493507 KLHL34Q8N239 644 aa12.4□□□□□ -0.42
CCNB3-208ENST00000493507 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
CCNB3-208ENST00000493507 AMER1Q5JTC6 1135 aaPredicted RBP12.37□□□□□ -0.43
CCNB3-208ENST00000493507 CHRDL2Q6WN34 429 aa12.37□□□□□ -0.43
CCNB3-208ENST00000493507 CREBZFQ9NS37 354 aa12.34□□□□□ -0.43
CCNB3-208ENST00000493507 SPOCK2Q92563 424 aa12.31□□□□□ -0.44
CCNB3-208ENST00000493507 FXR2P51116 673 aaKnown RBP eCLIP12.29□□□□□ -0.44
CCNB3-208ENST00000493507 RTN4Q9NQC3 1192 aaKnown RBP12.26□□□□□ -0.45
CCNB3-208ENST00000493507 PRKAR2AP13861 404 aaKnown RBP12.24□□□□□ -0.45
CCNB3-208ENST00000493507 PIP4P2Q8N4L2 257 aa12.23□□□□□ -0.45
CCNB3-208ENST00000493507 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
CCNB3-208ENST00000493507 NPM1P06748 294 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCNB3-208ENST00000493507 MNX1P50219 401 aaPredicted RBP12.21□□□□□ -0.45
CCNB3-208ENST00000493507 FARP1Q9Y4F1 1045 aaPredicted RBP12.17□□□□□ -0.46
CCNB3-208ENST00000493507 NUBP1P53384 320 aa12.13□□□□□ -0.47
CCNB3-208ENST00000493507 GSE1Q14687 1217 aa12.09□□□□□ -0.47
CCNB3-208ENST00000493507 CIZ1Q9ULV3 898 aaPredicted RBP12.08□□□□□ -0.48
CCNB3-208ENST00000493507 FAM212AQ96EL1 285 aa12.07□□□□□ -0.48
CCNB3-208ENST00000493507 DCAF8Q5TAQ9 597 aa12.06□□□□□ -0.48
CCNB3-208ENST00000493507 PKD2Q13563 968 aa12.05□□□□□ -0.48
CCNB3-208ENST00000493507 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
CCNB3-208ENST00000493507 TRIM41Q8WV44 630 aa12.03□□□□□ -0.48
CCNB3-208ENST00000493507 NISCHQ9Y2I1 1504 aa12.02□□□□□ -0.48
CCNB3-208ENST00000493507 ECM2O94769 699 aaPredicted RBP12□□□□□ -0.49
CCNB3-208ENST00000493507 PAK3O75914 559 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms