RNA–Protein interactions for RNA: ENST00000488934.1

SF3A3-207, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 5

Gene SF3A3, Length 273 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-207ENST00000488934 AEBP2Q6ZN18 517 aaPredicted RBP20.47■□□□□ 0.87
SF3A3-207ENST00000488934 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
SF3A3-207ENST00000488934 SENP3Q9H4L4 574 aaPredicted RBP17.58■□□□□ 0.4
SF3A3-207ENST00000488934 PHF23Q9BUL5 403 aaPredicted RBP17.39■□□□□ 0.37
SF3A3-207ENST00000488934 FOXD1Q16676 465 aa16.22■□□□□ 0.19
SF3A3-207ENST00000488934 PLPPR3Q6T4P5 718 aa16.16■□□□□ 0.18
SF3A3-207ENST00000488934 ADRA2BP18089 450 aa15.41■□□□□ 0.06
SF3A3-207ENST00000488934 PPP6R1Q9UPN7 881 aa15.39■□□□□ 0.05
SF3A3-207ENST00000488934 PIAS4Q8N2W9 510 aaPredicted RBP15.33■□□□□ 0.04
SF3A3-207ENST00000488934 MSH5O43196 834 aa15.18■□□□□ 0.02
SF3A3-207ENST00000488934 SCAF1Q9H7N4 1312 aaKnown RBP14.3□□□□□ -0.12
SF3A3-207ENST00000488934 PPP4R3CPQ6ZMV5 832 aa14.15□□□□□ -0.14
SF3A3-207ENST00000488934 POTEDQ86YR6 584 aa14.04□□□□□ -0.16
SF3A3-207ENST00000488934 MAPK8IP2Q13387 824 aaPredicted RBP14□□□□□ -0.17
SF3A3-207ENST00000488934 DMRT2Q9Y5R5 561 aa13.95□□□□□ -0.18
SF3A3-207ENST00000488934 NCBP3Q53F19 620 aaKnown RBP13.85□□□□□ -0.19
SF3A3-207ENST00000488934 CNKSR2Q8WXI2 1034 aa13.85□□□□□ -0.19
SF3A3-207ENST00000488934 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
SF3A3-207ENST00000488934 HOXD11P31277 338 aaPredicted RBP13.58□□□□□ -0.24
SF3A3-207ENST00000488934 KCNA4P22459 653 aa13.55□□□□□ -0.24
SF3A3-207ENST00000488934 NPM3O75607 178 aaKnown RBP13.49□□□□□ -0.25
SF3A3-207ENST00000488934 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
SF3A3-207ENST00000488934 DNAJC5BQ9UF47 199 aa13.19□□□□□ -0.3
SF3A3-207ENST00000488934 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13□□□□□ -0.332e-7■■■■□ 19.7
SF3A3-207ENST00000488934 SLC4A1APQ9BWU0 796 aaKnown RBP12.95□□□□□ -0.34
SF3A3-207ENST00000488934 RNF39Q9H2S5 420 aa12.9□□□□□ -0.34
SF3A3-207ENST00000488934 C1QBPQ07021 282 aaKnown RBP12.8□□□□□ -0.36
SF3A3-207ENST00000488934 CACNB1Q02641 598 aaPredicted RBP12.76□□□□□ -0.37
SF3A3-207ENST00000488934 SLC4A2P04920 1241 aa12.75□□□□□ -0.37
SF3A3-207ENST00000488934 U3KPZ7 1027 aaPredicted RBP12.69□□□□□ -0.38
SF3A3-207ENST00000488934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.64□□□□□ -0.39
SF3A3-207ENST00000488934 HNRNPUL2Q1KMD3 747 aaKnown RBP12.64□□□□□ -0.39
SF3A3-207ENST00000488934 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
SF3A3-207ENST00000488934 APLP2Q06481 763 aa12.6□□□□□ -0.39
SF3A3-207ENST00000488934 MYCNP04198 464 aaPredicted RBP12.57□□□□□ -0.4
SF3A3-207ENST00000488934 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
SF3A3-207ENST00000488934 CAPN15O75808 1086 aa12.42□□□□□ -0.42
SF3A3-207ENST00000488934 ZBTB22O15209 634 aa12.4□□□□□ -0.42
SF3A3-207ENST00000488934 SPINK5Q9NQ38 1064 aaPredicted RBP12.36□□□□□ -0.43
SF3A3-207ENST00000488934 ZNF219Q9P2Y4 722 aaPredicted RBP12.36□□□□□ -0.43
SF3A3-207ENST00000488934 NISCHQ9Y2I1 1504 aa12.36□□□□□ -0.43
SF3A3-207ENST00000488934 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
SF3A3-207ENST00000488934 TRHP20396 242 aaPredicted RBP12.3□□□□□ -0.44
SF3A3-207ENST00000488934 ATXN8OSP0DMR3 200 aa12.23□□□□□ -0.45
SF3A3-207ENST00000488934 CSRNP3Q8WYN3 585 aa12.22□□□□□ -0.45
SF3A3-207ENST00000488934 DSG3P32926 999 aa12.2□□□□□ -0.46
SF3A3-207ENST00000488934 ABCB7O75027 752 aa12.1□□□□□ -0.47
SF3A3-207ENST00000488934 ATF5Q9Y2D1 282 aaPredicted RBP12.08□□□□□ -0.48
SF3A3-207ENST00000488934 POLA2Q14181 598 aa12.03□□□□□ -0.48
SF3A3-207ENST00000488934 ZBTB12Q9Y330 459 aaPredicted RBP11.96□□□□□ -0.49
SF3A3-207ENST00000488934 FBLN2P98095 1184 aa11.8□□□□□ -0.52
SF3A3-207ENST00000488934 RBM42Q9BTD8 480 aaKnown RBP11.78□□□□□ -0.52
SF3A3-207ENST00000488934 OSCARQ8IYS5 282 aa11.62□□□□□ -0.55
SF3A3-207ENST00000488934 MKRN4PQ13434 485 aaPredicted RBP11.57□□□□□ -0.56
SF3A3-207ENST00000488934 SPDYE2BA6NHP3 402 aa11.55□□□□□ -0.56
SF3A3-207ENST00000488934 SPDYE6P0CI01 402 aa11.55□□□□□ -0.56
SF3A3-207ENST00000488934 SPDYE2Q495Y8 402 aa11.55□□□□□ -0.56
SF3A3-207ENST00000488934 AKT1S1Q96B36 256 aa11.53□□□□□ -0.56
SF3A3-207ENST00000488934 ZNF692Q9BU19 519 aaPredicted RBP11.45□□□□□ -0.58
SF3A3-207ENST00000488934 SSUH2Q9Y2M2 353 aa11.37□□□□□ -0.59
SF3A3-207ENST00000488934 REM2Q8IYK8 340 aaPredicted RBP11.36□□□□□ -0.59
SF3A3-207ENST00000488934 SPDYE4A6NLX3 237 aa11.32□□□□□ -0.6
SF3A3-207ENST00000488934 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
SF3A3-207ENST00000488934 CHRDL2Q6WN34 429 aa11.27□□□□□ -0.61
SF3A3-207ENST00000488934 PABPN1Q86U42 306 aaKnown RBP eCLIP11.27□□□□□ -0.61
SF3A3-207ENST00000488934 PITPNM1O00562 1244 aa11.21□□□□□ -0.61
SF3A3-207ENST00000488934 CLEC11AQ9Y240 323 aa11.19□□□□□ -0.62
SF3A3-207ENST00000488934 STAG3Q9UJ98 1225 aa11.15□□□□□ -0.62
SF3A3-207ENST00000488934 FKBP8Q14318 412 aa11.13□□□□□ -0.63
SF3A3-207ENST00000488934 POTEHQ6S545 545 aa11.12□□□□□ -0.63
SF3A3-207ENST00000488934 PRR29P0C7W0 189 aa11.09□□□□□ -0.63
SF3A3-207ENST00000488934 CCDC180Q9P1Z9 1646 aa11.09□□□□□ -0.63
SF3A3-207ENST00000488934 FXR2P51116 673 aaKnown RBP eCLIP11.05□□□□□ -0.64
SF3A3-207ENST00000488934 PROM2Q8N271 834 aa11.05□□□□□ -0.64
SF3A3-207ENST00000488934 PIP4P2Q8N4L2 257 aa11.05□□□□□ -0.64
SF3A3-207ENST00000488934 PRKAR2AP13861 404 aaKnown RBP10.96□□□□□ -0.65
SF3A3-207ENST00000488934 FBXO3Q9UK99 471 aa10.9□□□□□ -0.66
SF3A3-207ENST00000488934 PLEKHG5O94827 1062 aa10.88□□□□□ -0.67
SF3A3-207ENST00000488934 CHADLQ6NUI6 762 aa10.86□□□□□ -0.67
SF3A3-207ENST00000488934 CREBZFQ9NS37 354 aa10.81□□□□□ -0.68
SF3A3-207ENST00000488934 HAX1O00165 279 aa10.8□□□□□ -0.68
SF3A3-207ENST00000488934 FARP1Q9Y4F1 1045 aaPredicted RBP10.8□□□□□ -0.68
SF3A3-207ENST00000488934 MIER1Q8N108 512 aa10.78□□□□□ -0.68
SF3A3-207ENST00000488934 NPM1P06748 294 aaKnown RBP eCLIP10.77□□□□□ -0.69
SF3A3-207ENST00000488934 PLCD3Q8N3E9 789 aa10.77□□□□□ -0.69
SF3A3-207ENST00000488934 ABCC9O60706 1549 aa10.75□□□□□ -0.69
SF3A3-207ENST00000488934 ZBTB47Q9UFB7 747 aaPredicted RBP10.74□□□□□ -0.69
SF3A3-207ENST00000488934 C19orf67A6NJJ6 358 aa10.68□□□□□ -0.7
SF3A3-207ENST00000488934 PAK3O75914 559 aaPredicted RBP10.67□□□□□ -0.7
SF3A3-207ENST00000488934 VASPP50552 380 aaPredicted RBP10.66□□□□□ -0.7
SF3A3-207ENST00000488934 CD44P16070 742 aaKnown RBP10.65□□□□□ -0.7
SF3A3-207ENST00000488934 MNX1P50219 401 aaPredicted RBP10.63□□□□□ -0.71
SF3A3-207ENST00000488934 SP7Q8TDD2 431 aaPredicted RBP10.62□□□□□ -0.71
SF3A3-207ENST00000488934 KLHL34Q8N239 644 aa10.58□□□□□ -0.72
SF3A3-207ENST00000488934 CLCN6P51797 869 aa10.56□□□□□ -0.72
SF3A3-207ENST00000488934 ZRANB1Q9UGI0 708 aa10.56□□□□□ -0.72
SF3A3-207ENST00000488934 EVX2Q03828 476 aa10.53□□□□□ -0.72
SF3A3-207ENST00000488934 ZNF579Q8NAF0 562 aaKnown RBP10.51□□□□□ -0.73
SF3A3-207ENST00000488934 FAM212AQ96EL1 285 aa10.49□□□□□ -0.73
SF3A3-207ENST00000488934 TSPYL2Q9H2G4 693 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms