RNA–Protein interactions for RNA: ENST00000486983.1

SMARCAL1-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

TSL 2

Gene SMARCAL1, Length 793 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-212ENST00000486983 AEBP2Q6ZN18 517 aaPredicted RBP28.51■■■□□ 2.15
SMARCAL1-212ENST00000486983 CHIC1Q5VXU3 224 aa26.78■■□□□ 1.88
SMARCAL1-212ENST00000486983 SENP3Q9H4L4 574 aaPredicted RBP24.31■■□□□ 1.48
SMARCAL1-212ENST00000486983 PHF23Q9BUL5 403 aaPredicted RBP23.95■■□□□ 1.42
SMARCAL1-212ENST00000486983 FOXD1Q16676 465 aa22.71■■□□□ 1.23
SMARCAL1-212ENST00000486983 MSH5O43196 834 aa21.32■■□□□ 1
SMARCAL1-212ENST00000486983 POTEDQ86YR6 584 aa21.31■■□□□ 1
SMARCAL1-212ENST00000486983 PLPPR3Q6T4P5 718 aa21.25■□□□□ 0.99
SMARCAL1-212ENST00000486983 PIAS4Q8N2W9 510 aaPredicted RBP21.16■□□□□ 0.98
SMARCAL1-212ENST00000486983 PPP6R1Q9UPN7 881 aa21.05■□□□□ 0.96
SMARCAL1-212ENST00000486983 ADRA2BP18089 450 aa20.96■□□□□ 0.95
SMARCAL1-212ENST00000486983 MAPK8IP2Q13387 824 aaPredicted RBP19.33■□□□□ 0.68
SMARCAL1-212ENST00000486983 DMRT2Q9Y5R5 561 aa19.25■□□□□ 0.67
SMARCAL1-212ENST00000486983 SCAF1Q9H7N4 1312 aaKnown RBP19.09■□□□□ 0.65
SMARCAL1-212ENST00000486983 PPP4R3CPQ6ZMV5 832 aa18.6■□□□□ 0.57
SMARCAL1-212ENST00000486983 CACNB1Q02641 598 aaPredicted RBP18.47■□□□□ 0.55
SMARCAL1-212ENST00000486983 DCAF8L1A6NGE4 600 aa18.46■□□□□ 0.55
SMARCAL1-212ENST00000486983 HOXD11P31277 338 aaPredicted RBP18.43■□□□□ 0.54
SMARCAL1-212ENST00000486983 CNKSR2Q8WXI2 1034 aa18.3■□□□□ 0.52
SMARCAL1-212ENST00000486983 RNF39Q9H2S5 420 aa18.2■□□□□ 0.5
SMARCAL1-212ENST00000486983 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
SMARCAL1-212ENST00000486983 C1QBPQ07021 282 aaKnown RBP17.88■□□□□ 0.45
SMARCAL1-212ENST00000486983 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
SMARCAL1-212ENST00000486983 NCBP3Q53F19 620 aaKnown RBP17.76■□□□□ 0.43
SMARCAL1-212ENST00000486983 NPM3O75607 178 aaKnown RBP17.57■□□□□ 0.4
SMARCAL1-212ENST00000486983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.54■□□□□ 0.4
SMARCAL1-212ENST00000486983 U3KPZ7 1027 aaPredicted RBP17.19■□□□□ 0.34
SMARCAL1-212ENST00000486983 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
SMARCAL1-212ENST00000486983 KCNA4P22459 653 aa17.01■□□□□ 0.31
SMARCAL1-212ENST00000486983 CAPN15O75808 1086 aa16.97■□□□□ 0.31
SMARCAL1-212ENST00000486983 DSG3P32926 999 aa16.95■□□□□ 0.3
SMARCAL1-212ENST00000486983 SLC4A2P04920 1241 aa16.87■□□□□ 0.29
SMARCAL1-212ENST00000486983 TRHP20396 242 aaPredicted RBP16.64■□□□□ 0.25
SMARCAL1-212ENST00000486983 POTEHQ6S545 545 aa16.63■□□□□ 0.25
SMARCAL1-212ENST00000486983 ABCB7O75027 752 aa16.59■□□□□ 0.25
SMARCAL1-212ENST00000486983 APLP2Q06481 763 aa16.59■□□□□ 0.25
SMARCAL1-212ENST00000486983 ZNF219Q9P2Y4 722 aaPredicted RBP16.58■□□□□ 0.24
SMARCAL1-212ENST00000486983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.53■□□□□ 0.24
SMARCAL1-212ENST00000486983 HNRNPUL2Q1KMD3 747 aaKnown RBP16.53■□□□□ 0.24
SMARCAL1-212ENST00000486983 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
SMARCAL1-212ENST00000486983 MYCNP04198 464 aaPredicted RBP16.23■□□□□ 0.19
SMARCAL1-212ENST00000486983 RBM42Q9BTD8 480 aaKnown RBP16.14■□□□□ 0.17
SMARCAL1-212ENST00000486983 POLA2Q14181 598 aa16.13■□□□□ 0.17
SMARCAL1-212ENST00000486983 SLC4A1APQ9BWU0 796 aaKnown RBP15.98■□□□□ 0.15
SMARCAL1-212ENST00000486983 FOXD4L1Q9NU39 408 aa15.94■□□□□ 0.14
SMARCAL1-212ENST00000486983 CHRDL2Q6WN34 429 aa15.93■□□□□ 0.14
SMARCAL1-212ENST00000486983 ATF5Q9Y2D1 282 aaPredicted RBP15.93■□□□□ 0.14
SMARCAL1-212ENST00000486983 ZBTB12Q9Y330 459 aaPredicted RBP15.75■□□□□ 0.11
SMARCAL1-212ENST00000486983 AKT1S1Q96B36 256 aa15.72■□□□□ 0.11
SMARCAL1-212ENST00000486983 ZBTB22O15209 634 aa15.67■□□□□ 0.1
SMARCAL1-212ENST00000486983 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
SMARCAL1-212ENST00000486983 REM2Q8IYK8 340 aaPredicted RBP15.6■□□□□ 0.09
SMARCAL1-212ENST00000486983 PIP4P2Q8N4L2 257 aa15.51■□□□□ 0.07
SMARCAL1-212ENST00000486983 SP7Q8TDD2 431 aaPredicted RBP15.47■□□□□ 0.07
SMARCAL1-212ENST00000486983 PITPNM1O00562 1244 aa15.46■□□□□ 0.07
SMARCAL1-212ENST00000486983 ATXN8OSP0DMR3 200 aa15.43■□□□□ 0.06
SMARCAL1-212ENST00000486983 FXR2P51116 673 aaKnown RBP eCLIP15.35■□□□□ 0.05
SMARCAL1-212ENST00000486983 SPDYE2BA6NHP3 402 aa15.26■□□□□ 0.03
SMARCAL1-212ENST00000486983 HAX1O00165 279 aa15.26■□□□□ 0.03
SMARCAL1-212ENST00000486983 SPDYE6P0CI01 402 aa15.26■□□□□ 0.03
SMARCAL1-212ENST00000486983 FBLN2P98095 1184 aa15.26■□□□□ 0.03
SMARCAL1-212ENST00000486983 SPDYE2Q495Y8 402 aa15.26■□□□□ 0.03
SMARCAL1-212ENST00000486983 NISCHQ9Y2I1 1504 aa15.2■□□□□ 0.02
SMARCAL1-212ENST00000486983 MKRN4PQ13434 485 aaPredicted RBP15.18■□□□□ 0.02
SMARCAL1-212ENST00000486983 EVX2Q03828 476 aa15.1■□□□□ 0.01
SMARCAL1-212ENST00000486983 SPDYE1Q8NFV5 336 aaPredicted RBP15.06■□□□□ 0
SMARCAL1-212ENST00000486983 SSUH2Q9Y2M2 353 aa15.06■□□□□ 0
SMARCAL1-212ENST00000486983 CLEC11AQ9Y240 323 aa15.05■□□□□ -0
SMARCAL1-212ENST00000486983 PRKAR2AP13861 404 aaKnown RBP15.03■□□□□ -0
SMARCAL1-212ENST00000486983 ZNF692Q9BU19 519 aaPredicted RBP15.03■□□□□ -0
SMARCAL1-212ENST00000486983 C19orf67A6NJJ6 358 aa14.87□□□□□ -0.03
SMARCAL1-212ENST00000486983 CHADLQ6NUI6 762 aa14.83□□□□□ -0.04
SMARCAL1-212ENST00000486983 PABPN1Q86U42 306 aaKnown RBP eCLIP14.82□□□□□ -0.04
SMARCAL1-212ENST00000486983 PRR29P0C7W0 189 aa14.75□□□□□ -0.05
SMARCAL1-212ENST00000486983 GABBR2O75899 941 aa14.72□□□□□ -0.05
SMARCAL1-212ENST00000486983 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
SMARCAL1-212ENST00000486983 FARP1Q9Y4F1 1045 aaPredicted RBP14.56□□□□□ -0.08
SMARCAL1-212ENST00000486983 CD44P16070 742 aaKnown RBP14.55□□□□□ -0.08
SMARCAL1-212ENST00000486983 LHX8Q68G74 356 aa14.49□□□□□ -0.09
SMARCAL1-212ENST00000486983 POTEIP0CG38 1075 aa14.44□□□□□ -0.1
SMARCAL1-212ENST00000486983 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
SMARCAL1-212ENST00000486983 EHMT2Q96KQ7 1210 aa14.35□□□□□ -0.11
SMARCAL1-212ENST00000486983 CLCN6P51797 869 aa14.31□□□□□ -0.12
SMARCAL1-212ENST00000486983 ZNF579Q8NAF0 562 aaKnown RBP14.31□□□□□ -0.12
SMARCAL1-212ENST00000486983 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
SMARCAL1-212ENST00000486983 SPDYE4A6NLX3 237 aa14.29□□□□□ -0.12
SMARCAL1-212ENST00000486983 ZRANB1Q9UGI0 708 aa14.29□□□□□ -0.12
SMARCAL1-212ENST00000486983 DCBLD2Q96PD2 775 aa14.24□□□□□ -0.13
SMARCAL1-212ENST00000486983 GALR2O43603 387 aaPredicted RBP14.17□□□□□ -0.14
SMARCAL1-212ENST00000486983 PHF12Q96QT6 1004 aa14.11□□□□□ -0.15
SMARCAL1-212ENST00000486983 MNX1P50219 401 aaPredicted RBP14.09□□□□□ -0.15
SMARCAL1-212ENST00000486983 PAK3O75914 559 aaPredicted RBP14.08□□□□□ -0.16
SMARCAL1-212ENST00000486983 NPM1P06748 294 aaKnown RBP eCLIP14.03□□□□□ -0.16
SMARCAL1-212ENST00000486983 POTEB2H3BUK9 544 aa13.96□□□□□ -0.17
SMARCAL1-212ENST00000486983 OTUD5Q96G74 571 aa13.94□□□□□ -0.18
SMARCAL1-212ENST00000486983 PELP1Q8IZL8 1130 aaKnown RBP13.93□□□□□ -0.18
SMARCAL1-212ENST00000486983 PROM2Q8N271 834 aa13.92□□□□□ -0.18
SMARCAL1-212ENST00000486983 MS4A3Q96HJ5 214 aa13.91□□□□□ -0.18
SMARCAL1-212ENST00000486983 ASTLQ6HA08 431 aaPredicted RBP13.84□□□□□ -0.19
SMARCAL1-212ENST00000486983 TSPYL2Q9H2G4 693 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms