RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 AEBP2Q6ZN18 517 aaPredicted RBP10.42□□□□□ -0.74
NPHP3-206ENST00000474871 CHIC1Q5VXU3 224 aa10.15□□□□□ -0.78
NPHP3-206ENST00000474871 SLC24A1O60721 1099 aa9.43□□□□□ -0.9
NPHP3-206ENST00000474871 PRKCSHP14314 528 aaPredicted RBP9.27□□□□□ -0.93
NPHP3-206ENST00000474871 PHF23Q9BUL5 403 aaPredicted RBP9.26□□□□□ -0.93
NPHP3-206ENST00000474871 APLP2Q06481 763 aa9.18□□□□□ -0.94
NPHP3-206ENST00000474871 NISCHQ9Y2I1 1504 aa9.15□□□□□ -0.94
NPHP3-206ENST00000474871 PELP1Q8IZL8 1130 aaKnown RBP9.09□□□□□ -0.95
NPHP3-206ENST00000474871 MYT1Q01538 1121 aa9□□□□□ -0.97
NPHP3-206ENST00000474871 TTBK1Q5TCY1 1321 aaPredicted RBP8.97□□□□□ -0.97
NPHP3-206ENST00000474871 DAXXQ9UER7 740 aaPredicted RBP8.87□□□□□ -0.99
NPHP3-206ENST00000474871 ERICH6Q7L0X2 663 aa8.58□□□□□ -1.04
NPHP3-206ENST00000474871 FAM9AQ8IZU1 332 aaPredicted RBP8.53□□□□□ -1.04
NPHP3-206ENST00000474871 BCL11AQ9H165 835 aa8.5□□□□□ -1.05
NPHP3-206ENST00000474871 NCBP3Q53F19 620 aaKnown RBP8.39□□□□□ -1.07
NPHP3-206ENST00000474871 PLEKHG5O94827 1062 aa8.36□□□□□ -1.07
NPHP3-206ENST00000474871 SENP3Q9H4L4 574 aaPredicted RBP8.31□□□□□ -1.08
NPHP3-206ENST00000474871 PLPPR3Q6T4P5 718 aa8.3□□□□□ -1.08
NPHP3-206ENST00000474871 EIF5BO60841 1220 aaKnown RBP8.24□□□□□ -1.09
NPHP3-206ENST00000474871 SCAF1Q9H7N4 1312 aaKnown RBP8.23□□□□□ -1.09
NPHP3-206ENST00000474871 ADRA2BP18089 450 aa8.19□□□□□ -1.1
NPHP3-206ENST00000474871 KLHL34Q8N239 644 aa8.16□□□□□ -1.1
NPHP3-206ENST00000474871 RTN4Q9NQC3 1192 aaKnown RBP8.16□□□□□ -1.1
NPHP3-206ENST00000474871 TIMELESSQ9UNS1 1208 aa8.14□□□□□ -1.11
NPHP3-206ENST00000474871 PPP6R1Q9UPN7 881 aa8.14□□□□□ -1.11
NPHP3-206ENST00000474871 ARXQ96QS3 562 aa8.12□□□□□ -1.11
NPHP3-206ENST00000474871 UBE2Q2Q8WVN8 375 aa8.04□□□□□ -1.12
NPHP3-206ENST00000474871 HRCP23327 699 aa8.03□□□□□ -1.12
NPHP3-206ENST00000474871 FOXD1Q16676 465 aa7.98□□□□□ -1.13
NPHP3-206ENST00000474871 CCDC180Q9P1Z9 1646 aa7.98□□□□□ -1.13
NPHP3-206ENST00000474871 EHMT2Q96KQ7 1210 aa7.98□□□□□ -1.13
NPHP3-206ENST00000474871 PODXL2Q9NZ53 605 aa7.89□□□□□ -1.15
NPHP3-206ENST00000474871 ANO8Q9HCE9 1232 aaPredicted RBP7.85□□□□□ -1.15
NPHP3-206ENST00000474871 KCNA4P22459 653 aa7.85□□□□□ -1.15
NPHP3-206ENST00000474871 TULP1O00294 542 aaPredicted RBP7.76□□□□□ -1.17
NPHP3-206ENST00000474871 LOC105371045A0A1W2PR82 267 aa7.76□□□□□ -1.17
NPHP3-206ENST00000474871 ZCCHC6Q5VYS8 1495 aaKnown RBP7.72□□□□□ -1.17
NPHP3-206ENST00000474871 PDIA4P13667 645 aaKnown RBP7.72□□□□□ -1.17
NPHP3-206ENST00000474871 PKNOX2Q96KN3 472 aa7.71□□□□□ -1.18
NPHP3-206ENST00000474871 CSRNP3Q8WYN3 585 aa7.7□□□□□ -1.18
NPHP3-206ENST00000474871 ANP32EQ9BTT0 268 aa7.69□□□□□ -1.18
NPHP3-206ENST00000474871 HOMEZQ8IX15 550 aa7.68□□□□□ -1.18
NPHP3-206ENST00000474871 PPARGC1BQ86YN6 1023 aaKnown RBP7.68□□□□□ -1.18
NPHP3-206ENST00000474871 AMER1Q5JTC6 1135 aaPredicted RBP7.67□□□□□ -1.18
NPHP3-206ENST00000474871 TAOK2Q9UL54 1235 aa7.65□□□□□ -1.18
NPHP3-206ENST00000474871 SAMD1Q6SPF0 538 aaPredicted RBP7.64□□□□□ -1.19
NPHP3-206ENST00000474871 FGD1P98174 961 aa7.62□□□□□ -1.19
NPHP3-206ENST00000474871 CENPBP07199 599 aaPredicted RBP7.61□□□□□ -1.19
NPHP3-206ENST00000474871 PDE4CQ08493 712 aa7.59□□□□□ -1.19
NPHP3-206ENST00000474871 BCL11BQ9C0K0 894 aaPredicted RBP7.58□□□□□ -1.2
NPHP3-206ENST00000474871 SALL2Q9Y467 1007 aaPredicted RBP7.58□□□□□ -1.2
NPHP3-206ENST00000474871 DCAF1Q9Y4B6 1507 aa7.58□□□□□ -1.2
NPHP3-206ENST00000474871 RANGAP1P46060 587 aaPredicted RBP7.58□□□□□ -1.2
NPHP3-206ENST00000474871 DCAF8L2P0C7V8 631 aa7.57□□□□□ -1.2
NPHP3-206ENST00000474871 CHMP4AQ9BY43 222 aa7.56□□□□□ -1.2
NPHP3-206ENST00000474871 NPM2Q86SE8 214 aaKnown RBP7.51□□□□□ -1.21
NPHP3-206ENST00000474871 ACIN1Q9UKV3 1341 aaKnown RBP7.5□□□□□ -1.21
NPHP3-206ENST00000474871 AAMPQ13685 434 aa7.5□□□□□ -1.21
NPHP3-206ENST00000474871 DHX37Q8IY37 1157 aaKnown RBP7.49□□□□□ -1.21
NPHP3-206ENST00000474871 SHROOM4Q9ULL8 1493 aa7.49□□□□□ -1.21
NPHP3-206ENST00000474871 NEUROD1Q13562 356 aa7.47□□□□□ -1.21
NPHP3-206ENST00000474871 PIAS4Q8N2W9 510 aaPredicted RBP7.47□□□□□ -1.21
NPHP3-206ENST00000474871 RSPH6AQ9H0K4 717 aa7.47□□□□□ -1.21
NPHP3-206ENST00000474871 TAF7LQ5H9L4 462 aa7.46□□□□□ -1.21
NPHP3-206ENST00000474871 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.46□□□□□ -1.21
NPHP3-206ENST00000474871 CNKSR2Q8WXI2 1034 aa7.46□□□□□ -1.22
NPHP3-206ENST00000474871 MYO15BQ96JP2 1530 aa7.45□□□□□ -1.22
NPHP3-206ENST00000474871 TRIM26Q12899 539 aaPredicted RBP7.45□□□□□ -1.22
NPHP3-206ENST00000474871 RSPH4AQ5TD94 716 aa7.45□□□□□ -1.22
NPHP3-206ENST00000474871 GTF3C3Q9Y5Q9 886 aa7.43□□□□□ -1.22
NPHP3-206ENST00000474871 CCDC136Q96JN2 1154 aa7.43□□□□□ -1.22
NPHP3-206ENST00000474871 ABCC9O60706 1549 aa7.43□□□□□ -1.22
NPHP3-206ENST00000474871 PPP4R3CPQ6ZMV5 832 aa7.42□□□□□ -1.22
NPHP3-206ENST00000474871 ZBTB22O15209 634 aa7.41□□□□□ -1.22
NPHP3-206ENST00000474871 TPRNQ4KMQ1 711 aa7.4□□□□□ -1.22
NPHP3-206ENST00000474871 NEFLP07196 543 aa7.39□□□□□ -1.23
NPHP3-206ENST00000474871 NACADO15069 1562 aa7.38□□□□□ -1.23
NPHP3-206ENST00000474871 BRD2P25440 801 aaKnown RBP7.37□□□□□ -1.23
NPHP3-206ENST00000474871 FBXO3Q9UK99 471 aa7.35□□□□□ -1.23
NPHP3-206ENST00000474871 RB1CC1Q8TDY2 1594 aa7.35□□□□□ -1.23
NPHP3-206ENST00000474871 TMEM132AQ24JP5 1023 aa7.35□□□□□ -1.23
NPHP3-206ENST00000474871 NPM3O75607 178 aaKnown RBP7.34□□□□□ -1.23
NPHP3-206ENST00000474871 C14orf37Q86TY3 774 aa7.34□□□□□ -1.23
NPHP3-206ENST00000474871 SCRIBQ14160 1630 aa7.33□□□□□ -1.24
NPHP3-206ENST00000474871 IGSF3O75054 1194 aa7.33□□□□□ -1.24
NPHP3-206ENST00000474871 RBM10P98175 930 aaKnown RBP7.32□□□□□ -1.24
NPHP3-206ENST00000474871 HAP1P54257 671 aaPredicted RBP7.32□□□□□ -1.24
NPHP3-206ENST00000474871 ERICH6BQ5W0A0 696 aa7.3□□□□□ -1.24
NPHP3-206ENST00000474871 PAXIP1Q6ZW49 1069 aaPredicted RBP7.28□□□□□ -1.24
NPHP3-206ENST00000474871 SLC4A1APQ9BWU0 796 aaKnown RBP7.28□□□□□ -1.24
NPHP3-206ENST00000474871 CHRM1P11229 460 aaPredicted RBP7.28□□□□□ -1.24
NPHP3-206ENST00000474871 MAPK8IP2Q13387 824 aaPredicted RBP7.27□□□□□ -1.25
NPHP3-206ENST00000474871 UBTFP17480 764 aaKnown RBP7.26□□□□□ -1.25
NPHP3-206ENST00000474871 BCANQ96GW7 911 aa7.26□□□□□ -1.25
NPHP3-206ENST00000474871 ZMYND15Q9H091 742 aa7.25□□□□□ -1.25
NPHP3-206ENST00000474871 TSHZ2Q9NRE2 1034 aa7.24□□□□□ -1.25
NPHP3-206ENST00000474871 A0A0U1RQG5 324 aaPredicted RBP7.22□□□□□ -1.25
NPHP3-206ENST00000474871 SUPT5HO00267 1087 aaKnown RBP7.21□□□□□ -1.26
NPHP3-206ENST00000474871 UNC13AQ9UPW8 1703 aa7.2□□□□□ -1.26
NPHP3-206ENST00000474871 PLCB2Q00722 1185 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms