RNA–Protein interactions for RNA: ENST00000474336.5

PKNOX1-205, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 438 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-205ENST00000474336 AEBP2Q6ZN18 517 aaPredicted RBP31.71■■■□□ 2.67
PKNOX1-205ENST00000474336 CHIC1Q5VXU3 224 aa29.87■■■□□ 2.37
PKNOX1-205ENST00000474336 SENP3Q9H4L4 574 aaPredicted RBP27.13■■□□□ 1.93
PKNOX1-205ENST00000474336 PHF23Q9BUL5 403 aaPredicted RBP26.74■■□□□ 1.87
PKNOX1-205ENST00000474336 FOXD1Q16676 465 aa25.31■■□□□ 1.64
PKNOX1-205ENST00000474336 MSH5O43196 834 aa23.83■■□□□ 1.41
PKNOX1-205ENST00000474336 PLPPR3Q6T4P5 718 aa23.76■■□□□ 1.39
PKNOX1-205ENST00000474336 POTEDQ86YR6 584 aa23.71■■□□□ 1.39
PKNOX1-205ENST00000474336 PIAS4Q8N2W9 510 aaPredicted RBP23.58■■□□□ 1.37
PKNOX1-205ENST00000474336 PPP6R1Q9UPN7 881 aa23.43■■□□□ 1.34
PKNOX1-205ENST00000474336 ADRA2BP18089 450 aa23.34■■□□□ 1.33
PKNOX1-205ENST00000474336 MAPK8IP2Q13387 824 aaPredicted RBP21.53■■□□□ 1.04
PKNOX1-205ENST00000474336 DMRT2Q9Y5R5 561 aa21.46■■□□□ 1.03
PKNOX1-205ENST00000474336 SCAF1Q9H7N4 1312 aaKnown RBP21.43■■□□□ 1.02
PKNOX1-205ENST00000474336 PPP4R3CPQ6ZMV5 832 aa20.78■□□□□ 0.92
PKNOX1-205ENST00000474336 CACNB1Q02641 598 aaPredicted RBP20.62■□□□□ 0.89
PKNOX1-205ENST00000474336 DCAF8L1A6NGE4 600 aa20.6■□□□□ 0.89
PKNOX1-205ENST00000474336 HOXD11P31277 338 aaPredicted RBP20.58■□□□□ 0.89
PKNOX1-205ENST00000474336 CNKSR2Q8WXI2 1034 aa20.47■□□□□ 0.87
PKNOX1-205ENST00000474336 RNF216Q9NWF9 866 aaPredicted RBP20.36■□□□□ 0.85
PKNOX1-205ENST00000474336 RNF39Q9H2S5 420 aa20.28■□□□□ 0.84
PKNOX1-205ENST00000474336 C1QBPQ07021 282 aaKnown RBP20■□□□□ 0.79
PKNOX1-205ENST00000474336 DNAJC5BQ9UF47 199 aa19.95■□□□□ 0.78
PKNOX1-205ENST00000474336 NCBP3Q53F19 620 aaKnown RBP19.92■□□□□ 0.78
PKNOX1-205ENST00000474336 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.61■□□□□ 0.73
PKNOX1-205ENST00000474336 NPM3O75607 178 aaKnown RBP19.59■□□□□ 0.73
PKNOX1-205ENST00000474336 U3KPZ7 1027 aaPredicted RBP19.13■□□□□ 0.65
PKNOX1-205ENST00000474336 CAPN15O75808 1086 aa18.95■□□□□ 0.62
PKNOX1-205ENST00000474336 KCNA4P22459 653 aa18.95■□□□□ 0.62
PKNOX1-205ENST00000474336 SPINK5Q9NQ38 1064 aaPredicted RBP18.94■□□□□ 0.62
PKNOX1-205ENST00000474336 DSG3P32926 999 aa18.9■□□□□ 0.62
PKNOX1-205ENST00000474336 SLC4A2P04920 1241 aa18.78■□□□□ 0.6
PKNOX1-205ENST00000474336 APLP2Q06481 763 aa18.64■□□□□ 0.57
PKNOX1-205ENST00000474336 TRHP20396 242 aaPredicted RBP18.58■□□□□ 0.56
PKNOX1-205ENST00000474336 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
PKNOX1-205ENST00000474336 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
PKNOX1-205ENST00000474336 ZNF219Q9P2Y4 722 aaPredicted RBP18.55■□□□□ 0.56
PKNOX1-205ENST00000474336 POTEHQ6S545 545 aa18.54■□□□□ 0.56
PKNOX1-205ENST00000474336 ABCB7O75027 752 aa18.46■□□□□ 0.55
PKNOX1-205ENST00000474336 SAMD1Q6SPF0 538 aaPredicted RBP18.42■□□□□ 0.54
PKNOX1-205ENST00000474336 MYCNP04198 464 aaPredicted RBP18.14■□□□□ 0.49
PKNOX1-205ENST00000474336 RBM42Q9BTD8 480 aaKnown RBP18.07■□□□□ 0.48
PKNOX1-205ENST00000474336 POLA2Q14181 598 aa18.02■□□□□ 0.48
PKNOX1-205ENST00000474336 SLC4A1APQ9BWU0 796 aaKnown RBP17.85■□□□□ 0.45
PKNOX1-205ENST00000474336 FOXD4L1Q9NU39 408 aa17.8■□□□□ 0.44
PKNOX1-205ENST00000474336 CHRDL2Q6WN34 429 aa17.76■□□□□ 0.43
PKNOX1-205ENST00000474336 ATF5Q9Y2D1 282 aaPredicted RBP17.71■□□□□ 0.43
PKNOX1-205ENST00000474336 ZBTB12Q9Y330 459 aaPredicted RBP17.65■□□□□ 0.42
PKNOX1-205ENST00000474336 AKT1S1Q96B36 256 aa17.59■□□□□ 0.41
PKNOX1-205ENST00000474336 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
PKNOX1-205ENST00000474336 OSCARQ8IYS5 282 aa17.42■□□□□ 0.38
PKNOX1-205ENST00000474336 REM2Q8IYK8 340 aaPredicted RBP17.41■□□□□ 0.38
PKNOX1-205ENST00000474336 ZBTB22O15209 634 aa17.39■□□□□ 0.37
PKNOX1-205ENST00000474336 ATXN8OSP0DMR3 200 aa17.3■□□□□ 0.36
PKNOX1-205ENST00000474336 PIP4P2Q8N4L2 257 aa17.27■□□□□ 0.36
PKNOX1-205ENST00000474336 SP7Q8TDD2 431 aaPredicted RBP17.25■□□□□ 0.35
PKNOX1-205ENST00000474336 PITPNM1O00562 1244 aa17.21■□□□□ 0.35
PKNOX1-205ENST00000474336 FXR2P51116 673 aaKnown RBP eCLIP17.14■□□□□ 0.33
PKNOX1-205ENST00000474336 FBLN2P98095 1184 aa17.09■□□□□ 0.33
PKNOX1-205ENST00000474336 SPDYE2BA6NHP3 402 aa17.07■□□□□ 0.32
PKNOX1-205ENST00000474336 SPDYE6P0CI01 402 aa17.07■□□□□ 0.32
PKNOX1-205ENST00000474336 SPDYE2Q495Y8 402 aa17.07■□□□□ 0.32
PKNOX1-205ENST00000474336 HAX1O00165 279 aa17.06■□□□□ 0.32
PKNOX1-205ENST00000474336 MKRN4PQ13434 485 aaPredicted RBP16.89■□□□□ 0.29
PKNOX1-205ENST00000474336 SPDYE1Q8NFV5 336 aaPredicted RBP16.84■□□□□ 0.29
PKNOX1-205ENST00000474336 ZNF692Q9BU19 519 aaPredicted RBP16.83■□□□□ 0.28
PKNOX1-205ENST00000474336 CLEC11AQ9Y240 323 aa16.83■□□□□ 0.28
PKNOX1-205ENST00000474336 EVX2Q03828 476 aa16.79■□□□□ 0.28
PKNOX1-205ENST00000474336 SSUH2Q9Y2M2 353 aa16.79■□□□□ 0.28
PKNOX1-205ENST00000474336 PRKAR2AP13861 404 aaKnown RBP16.78■□□□□ 0.28
PKNOX1-205ENST00000474336 C19orf67A6NJJ6 358 aa16.6■□□□□ 0.25
PKNOX1-205ENST00000474336 PABPN1Q86U42 306 aaKnown RBP eCLIP16.55■□□□□ 0.24
PKNOX1-205ENST00000474336 PRR29P0C7W0 189 aa16.52■□□□□ 0.24
PKNOX1-205ENST00000474336 CHADLQ6NUI6 762 aa16.52■□□□□ 0.24
PKNOX1-205ENST00000474336 GABBR2O75899 941 aa16.43■□□□□ 0.22
PKNOX1-205ENST00000474336 CSRNP3Q8WYN3 585 aa16.36■□□□□ 0.21
PKNOX1-205ENST00000474336 FARP1Q9Y4F1 1045 aaPredicted RBP16.26■□□□□ 0.19
PKNOX1-205ENST00000474336 CD44P16070 742 aaKnown RBP16.23■□□□□ 0.19
PKNOX1-205ENST00000474336 LHX8Q68G74 356 aa16.18■□□□□ 0.18
PKNOX1-205ENST00000474336 CLCN6P51797 869 aa16.12■□□□□ 0.17
PKNOX1-205ENST00000474336 STAG3Q9UJ98 1225 aa16.08■□□□□ 0.16
PKNOX1-205ENST00000474336 POTEIP0CG38 1075 aa16.05■□□□□ 0.16
PKNOX1-205ENST00000474336 CREBZFQ9NS37 354 aa16.02■□□□□ 0.16
PKNOX1-205ENST00000474336 EHMT2Q96KQ7 1210 aa15.98■□□□□ 0.15
PKNOX1-205ENST00000474336 SPDYE4A6NLX3 237 aa15.97■□□□□ 0.15
PKNOX1-205ENST00000474336 ZNF579Q8NAF0 562 aaKnown RBP15.97■□□□□ 0.15
PKNOX1-205ENST00000474336 ZRANB1Q9UGI0 708 aa15.96■□□□□ 0.15
PKNOX1-205ENST00000474336 DCBLD2Q96PD2 775 aa15.94■□□□□ 0.14
PKNOX1-205ENST00000474336 PAK3O75914 559 aaPredicted RBP15.79■□□□□ 0.12
PKNOX1-205ENST00000474336 GALR2O43603 387 aaPredicted RBP15.77■□□□□ 0.12
PKNOX1-205ENST00000474336 NPM1P06748 294 aaKnown RBP eCLIP15.76■□□□□ 0.11
PKNOX1-205ENST00000474336 MNX1P50219 401 aaPredicted RBP15.7■□□□□ 0.1
PKNOX1-205ENST00000474336 PHF12Q96QT6 1004 aa15.69■□□□□ 0.1
PKNOX1-205ENST00000474336 PROM2Q8N271 834 aa15.53■□□□□ 0.08
PKNOX1-205ENST00000474336 OTUD5Q96G74 571 aa15.53■□□□□ 0.08
PKNOX1-205ENST00000474336 POTEB2H3BUK9 544 aa15.52■□□□□ 0.08
PKNOX1-205ENST00000474336 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
PKNOX1-205ENST00000474336 MS4A3Q96HJ5 214 aa15.47■□□□□ 0.07
PKNOX1-205ENST00000474336 ASTLQ6HA08 431 aaPredicted RBP15.45■□□□□ 0.06
PKNOX1-205ENST00000474336 CCDC180Q9P1Z9 1646 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms