RNA–Protein interactions for RNA: ENST00000467762.2

RIF1-209, Transcript of replication timing regulatory factor 1, humanhuman

TSL 4

Gene RIF1, Length 545 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-209ENST00000467762 AEBP2Q6ZN18 517 aaPredicted RBP18■□□□□ 0.47
RIF1-209ENST00000467762 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
RIF1-209ENST00000467762 SENP3Q9H4L4 574 aaPredicted RBP15.24■□□□□ 0.03
RIF1-209ENST00000467762 PHF23Q9BUL5 403 aaPredicted RBP15.18■□□□□ 0.02
RIF1-209ENST00000467762 FOXD1Q16676 465 aa14.22□□□□□ -0.13
RIF1-209ENST00000467762 PLPPR3Q6T4P5 718 aa13.85□□□□□ -0.19
RIF1-209ENST00000467762 PPP6R1Q9UPN7 881 aa13.48□□□□□ -0.25
RIF1-209ENST00000467762 ADRA2BP18089 450 aa13.45□□□□□ -0.26
RIF1-209ENST00000467762 PIAS4Q8N2W9 510 aaPredicted RBP13.33□□□□□ -0.28
RIF1-209ENST00000467762 MSH5O43196 834 aa13.17□□□□□ -0.3
RIF1-209ENST00000467762 POTEDQ86YR6 584 aa12.98□□□□□ -0.33
RIF1-209ENST00000467762 MAPK8IP2Q13387 824 aaPredicted RBP12.29□□□□□ -0.44
RIF1-209ENST00000467762 SCAF1Q9H7N4 1312 aaKnown RBP12.2□□□□□ -0.46
RIF1-209ENST00000467762 PPP4R3CPQ6ZMV5 832 aa12.19□□□□□ -0.46
RIF1-209ENST00000467762 DMRT2Q9Y5R5 561 aa12.14□□□□□ -0.47
RIF1-209ENST00000467762 CNKSR2Q8WXI2 1034 aa11.89□□□□□ -0.51
RIF1-209ENST00000467762 HOXD11P31277 338 aaPredicted RBP11.77□□□□□ -0.53
RIF1-209ENST00000467762 NCBP3Q53F19 620 aaKnown RBP11.74□□□□□ -0.53
RIF1-209ENST00000467762 RNF216Q9NWF9 866 aaPredicted RBP11.73□□□□□ -0.53
RIF1-209ENST00000467762 NPM3O75607 178 aaKnown RBP11.64□□□□□ -0.55
RIF1-209ENST00000467762 DCAF8L1A6NGE4 600 aa11.63□□□□□ -0.55
RIF1-209ENST00000467762 KCNA4P22459 653 aa11.63□□□□□ -0.55
RIF1-209ENST00000467762 RNF39Q9H2S5 420 aa11.29□□□□□ -0.6
RIF1-209ENST00000467762 DNAJC5BQ9UF47 199 aa11.28□□□□□ -0.6
RIF1-209ENST00000467762 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.21□□□□□ -0.61
RIF1-209ENST00000467762 CACNB1Q02641 598 aaPredicted RBP11.19□□□□□ -0.62
RIF1-209ENST00000467762 C1QBPQ07021 282 aaKnown RBP11.1□□□□□ -0.63
RIF1-209ENST00000467762 SLC4A2P04920 1241 aa11.08□□□□□ -0.64
RIF1-209ENST00000467762 U3KPZ7 1027 aaPredicted RBP11.04□□□□□ -0.64
RIF1-209ENST00000467762 SLC4A1APQ9BWU0 796 aaKnown RBP10.99□□□□□ -0.65
RIF1-209ENST00000467762 SPINK5Q9NQ38 1064 aaPredicted RBP10.82□□□□□ -0.68
RIF1-209ENST00000467762 CAPN15O75808 1086 aa10.76□□□□□ -0.69
RIF1-209ENST00000467762 FOXD4L1Q9NU39 408 aa10.75□□□□□ -0.69
RIF1-209ENST00000467762 NISCHQ9Y2I1 1504 aa10.74□□□□□ -0.69
RIF1-209ENST00000467762 ZBTB22O15209 634 aa10.73□□□□□ -0.69
RIF1-209ENST00000467762 MYCNP04198 464 aaPredicted RBP10.73□□□□□ -0.69
RIF1-209ENST00000467762 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.7□□□□□ -0.7
RIF1-209ENST00000467762 HNRNPUL2Q1KMD3 747 aaKnown RBP10.7□□□□□ -0.7
RIF1-209ENST00000467762 SAMD1Q6SPF0 538 aaPredicted RBP10.68□□□□□ -0.7
RIF1-209ENST00000467762 DSG3P32926 999 aa10.65□□□□□ -0.7
RIF1-209ENST00000467762 APLP2Q06481 763 aa10.65□□□□□ -0.7
RIF1-209ENST00000467762 TRHP20396 242 aaPredicted RBP10.64□□□□□ -0.71
RIF1-209ENST00000467762 ZNF219Q9P2Y4 722 aaPredicted RBP10.6□□□□□ -0.71
RIF1-209ENST00000467762 ABCB7O75027 752 aa10.57□□□□□ -0.72
RIF1-209ENST00000467762 ATF5Q9Y2D1 282 aaPredicted RBP10.53□□□□□ -0.72
RIF1-209ENST00000467762 POLA2Q14181 598 aa10.4□□□□□ -0.74
RIF1-209ENST00000467762 CSRNP3Q8WYN3 585 aa10.39□□□□□ -0.75
RIF1-209ENST00000467762 EHMT2Q96KQ7 1210 aa10.39□□□□□ -0.75
RIF1-209ENST00000467762 ATXN8OSP0DMR3 200 aa10.35□□□□□ -0.75
RIF1-209ENST00000467762 ZBTB12Q9Y330 459 aaPredicted RBP10.16□□□□□ -0.78
RIF1-209ENST00000467762 OSCARQ8IYS5 282 aa10.1□□□□□ -0.79
RIF1-209ENST00000467762 RBM42Q9BTD8 480 aaKnown RBP10.1□□□□□ -0.79
RIF1-209ENST00000467762 SLC24A1O60721 1099 aa10.07□□□□□ -0.8
RIF1-209ENST00000467762 MKRN4PQ13434 485 aaPredicted RBP10.05□□□□□ -0.8
RIF1-209ENST00000467762 POTEHQ6S545 545 aa10.02□□□□□ -0.81
RIF1-209ENST00000467762 FBLN2P98095 1184 aa10.01□□□□□ -0.81
RIF1-209ENST00000467762 AKT1S1Q96B36 256 aa9.94□□□□□ -0.82
RIF1-209ENST00000467762 SPDYE2BA6NHP3 402 aa9.89□□□□□ -0.83
RIF1-209ENST00000467762 SPDYE6P0CI01 402 aa9.89□□□□□ -0.83
RIF1-209ENST00000467762 SPDYE2Q495Y8 402 aa9.89□□□□□ -0.83
RIF1-209ENST00000467762 REM2Q8IYK8 340 aaPredicted RBP9.86□□□□□ -0.83
RIF1-209ENST00000467762 CHRDL2Q6WN34 429 aa9.84□□□□□ -0.83
RIF1-209ENST00000467762 SSUH2Q9Y2M2 353 aa9.82□□□□□ -0.84
RIF1-209ENST00000467762 ZNF692Q9BU19 519 aaPredicted RBP9.81□□□□□ -0.84
RIF1-209ENST00000467762 PITPNM1O00562 1244 aa9.79□□□□□ -0.84
RIF1-209ENST00000467762 PABPN1Q86U42 306 aaKnown RBP eCLIP9.69□□□□□ -0.86
RIF1-209ENST00000467762 PIP4P2Q8N4L2 257 aa9.67□□□□□ -0.86
RIF1-209ENST00000467762 SPDYE1Q8NFV5 336 aaPredicted RBP9.66□□□□□ -0.86
RIF1-209ENST00000467762 CLEC11AQ9Y240 323 aa9.66□□□□□ -0.86
RIF1-209ENST00000467762 SPDYE4A6NLX3 237 aa9.64□□□□□ -0.87
RIF1-209ENST00000467762 FXR2P51116 673 aaKnown RBP eCLIP9.63□□□□□ -0.87
RIF1-209ENST00000467762 PRKAR2AP13861 404 aaKnown RBP9.51□□□□□ -0.89
RIF1-209ENST00000467762 PRR29P0C7W0 189 aa9.5□□□□□ -0.89
RIF1-209ENST00000467762 CHADLQ6NUI6 762 aa9.49□□□□□ -0.89
RIF1-209ENST00000467762 PROM2Q8N271 834 aa9.46□□□□□ -0.9
RIF1-209ENST00000467762 AMER1Q5JTC6 1135 aaPredicted RBP9.42□□□□□ -0.9
RIF1-209ENST00000467762 FKBP8Q14318 412 aa9.41□□□□□ -0.9
RIF1-209ENST00000467762 STAG3Q9UJ98 1225 aa9.41□□□□□ -0.9
RIF1-209ENST00000467762 HAX1O00165 279 aa9.4□□□□□ -0.9
RIF1-209ENST00000467762 RTN4Q9NQC3 1192 aaKnown RBP9.39□□□□□ -0.91
RIF1-209ENST00000467762 EVX2Q03828 476 aa9.37□□□□□ -0.91
RIF1-209ENST00000467762 CREBZFQ9NS37 354 aa9.36□□□□□ -0.91
RIF1-209ENST00000467762 SP7Q8TDD2 431 aaPredicted RBP9.34□□□□□ -0.91
RIF1-209ENST00000467762 FARP1Q9Y4F1 1045 aaPredicted RBP9.33□□□□□ -0.92
RIF1-209ENST00000467762 C19orf67A6NJJ6 358 aa9.32□□□□□ -0.92
RIF1-209ENST00000467762 CCDC180Q9P1Z9 1646 aa9.27□□□□□ -0.92
RIF1-209ENST00000467762 CD44P16070 742 aaKnown RBP9.23□□□□□ -0.93
RIF1-209ENST00000467762 MNX1P50219 401 aaPredicted RBP9.23□□□□□ -0.93
RIF1-209ENST00000467762 MIER1Q8N108 512 aa9.15□□□□□ -0.94
RIF1-209ENST00000467762 NPM1P06748 294 aaKnown RBP eCLIP9.13□□□□□ -0.95
RIF1-209ENST00000467762 GABBR2O75899 941 aa9.12□□□□□ -0.95
RIF1-209ENST00000467762 PLCD3Q8N3E9 789 aa9.12□□□□□ -0.95
RIF1-209ENST00000467762 ZRANB1Q9UGI0 708 aa9.12□□□□□ -0.95
RIF1-209ENST00000467762 ZNF579Q8NAF0 562 aaKnown RBP9.1□□□□□ -0.95
RIF1-209ENST00000467762 ZCCHC6Q5VYS8 1495 aaKnown RBP9.08□□□□□ -0.96
RIF1-209ENST00000467762 PLEKHG5O94827 1062 aa9.07□□□□□ -0.96
RIF1-209ENST00000467762 FBXO3Q9UK99 471 aa9.07□□□□□ -0.96
RIF1-209ENST00000467762 PHF12Q96QT6 1004 aa9.06□□□□□ -0.96
RIF1-209ENST00000467762 PAK3O75914 559 aaPredicted RBP9.05□□□□□ -0.96
RIF1-209ENST00000467762 VASPP50552 380 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms