RNA–Protein interactions for RNA: ENST00000465643.1

CDK13-203, Transcript of cyclin dependent kinase 13, humanhuman

TSL 1 (best)

Gene CDK13, Length 2,394 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK13-203ENST00000465643 CHIC1Q5VXU3 224 aa17.08■□□□□ 0.33
CDK13-203ENST00000465643 AEBP2Q6ZN18 517 aaPredicted RBP17.04■□□□□ 0.32
CDK13-203ENST00000465643 PHF23Q9BUL5 403 aaPredicted RBP15.2■□□□□ 0.02
CDK13-203ENST00000465643 SENP3Q9H4L4 574 aaPredicted RBP14.19□□□□□ -0.14
CDK13-203ENST00000465643 PLPPR3Q6T4P5 718 aa14.08□□□□□ -0.16
CDK13-203ENST00000465643 ADRA2BP18089 450 aa13.37□□□□□ -0.27
CDK13-203ENST00000465643 PPP6R1Q9UPN7 881 aa13.25□□□□□ -0.29
CDK13-203ENST00000465643 FOXD1Q16676 465 aa13.22□□□□□ -0.29
CDK13-203ENST00000465643 KCNA4P22459 653 aa13□□□□□ -0.33
CDK13-203ENST00000465643 EHMT2Q96KQ7 1210 aa12.84□□□□□ -0.35
CDK13-203ENST00000465643 PIAS4Q8N2W9 510 aaPredicted RBP12.58□□□□□ -0.4
CDK13-203ENST00000465643 PPP4R3CPQ6ZMV5 832 aa12.54□□□□□ -0.4
CDK13-203ENST00000465643 SLC4A1APQ9BWU0 796 aaKnown RBP12.4□□□□□ -0.42
CDK13-203ENST00000465643 CSRNP3Q8WYN3 585 aa12.38□□□□□ -0.43
CDK13-203ENST00000465643 NCBP3Q53F19 620 aaKnown RBP12.27□□□□□ -0.45
CDK13-203ENST00000465643 NPM3O75607 178 aaKnown RBP12.23□□□□□ -0.45
CDK13-203ENST00000465643 ZBTB22O15209 634 aa12.01□□□□□ -0.49
CDK13-203ENST00000465643 CNKSR2Q8WXI2 1034 aa12□□□□□ -0.49
CDK13-203ENST00000465643 SCAF1Q9H7N4 1312 aaKnown RBP11.9□□□□□ -0.5
CDK13-203ENST00000465643 MAPK8IP2Q13387 824 aaPredicted RBP11.89□□□□□ -0.51
CDK13-203ENST00000465643 MSH5O43196 834 aa11.81□□□□□ -0.52
CDK13-203ENST00000465643 FOXD4L1Q9NU39 408 aa11.69□□□□□ -0.54
CDK13-203ENST00000465643 RNF216Q9NWF9 866 aaPredicted RBP11.62□□□□□ -0.55
CDK13-203ENST00000465643 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
CDK13-203ENST00000465643 DMRT2Q9Y5R5 561 aa11.45□□□□□ -0.58
CDK13-203ENST00000465643 SLC4A2P04920 1241 aa11.45□□□□□ -0.58
CDK13-203ENST00000465643 HOXD11P31277 338 aaPredicted RBP11.43□□□□□ -0.58
CDK13-203ENST00000465643 RTN4Q9NQC3 1192 aaKnown RBP11.23□□□□□ -0.61
CDK13-203ENST00000465643 MYCNP04198 464 aaPredicted RBP11.2□□□□□ -0.62
CDK13-203ENST00000465643 ATXN8OSP0DMR3 200 aa11.13□□□□□ -0.63
CDK13-203ENST00000465643 FKBP8Q14318 412 aa11.13□□□□□ -0.63
CDK13-203ENST00000465643 AMER1Q5JTC6 1135 aaPredicted RBP11.06□□□□□ -0.64
CDK13-203ENST00000465643 ATF5Q9Y2D1 282 aaPredicted RBP11.04□□□□□ -0.64
CDK13-203ENST00000465643 DCAF8L1A6NGE4 600 aa11.01□□□□□ -0.65
CDK13-203ENST00000465643 SLC24A1O60721 1099 aa11.01□□□□□ -0.65
CDK13-203ENST00000465643 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.92□□□□□ -0.663e-9■■□□□ 11.8
CDK13-203ENST00000465643 U3KPZ7 1027 aaPredicted RBP10.87□□□□□ -0.67
CDK13-203ENST00000465643 SAMD1Q6SPF0 538 aaPredicted RBP10.78□□□□□ -0.68
CDK13-203ENST00000465643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.74□□□□□ -0.69
CDK13-203ENST00000465643 HNRNPUL2Q1KMD3 747 aaKnown RBP10.74□□□□□ -0.69
CDK13-203ENST00000465643 ZNF219Q9P2Y4 722 aaPredicted RBP10.67□□□□□ -0.7
CDK13-203ENST00000465643 MKRN4PQ13434 485 aaPredicted RBP10.54□□□□□ -0.72
CDK13-203ENST00000465643 SPDYE4A6NLX3 237 aa10.52□□□□□ -0.73
CDK13-203ENST00000465643 SPINK5Q9NQ38 1064 aaPredicted RBP10.44□□□□□ -0.74
CDK13-203ENST00000465643 APLP2Q06481 763 aa10.44□□□□□ -0.74
CDK13-203ENST00000465643 FBXO3Q9UK99 471 aa10.43□□□□□ -0.74
CDK13-203ENST00000465643 TRHP20396 242 aaPredicted RBP10.42□□□□□ -0.74
CDK13-203ENST00000465643 PROM2Q8N271 834 aa10.4□□□□□ -0.74
CDK13-203ENST00000465643 POLA2Q14181 598 aa10.37□□□□□ -0.75
CDK13-203ENST00000465643 VASPP50552 380 aaPredicted RBP10.37□□□□□ -0.75
CDK13-203ENST00000465643 IFNLR1Q8IU57 520 aaPredicted RBP10.34□□□□□ -0.75
CDK13-203ENST00000465643 FBLN2P98095 1184 aa10.33□□□□□ -0.76
CDK13-203ENST00000465643 CAPN15O75808 1086 aa10.3□□□□□ -0.76
CDK13-203ENST00000465643 PLCB2Q00722 1185 aa10.26□□□□□ -0.77
CDK13-203ENST00000465643 RNF39Q9H2S5 420 aa10.26□□□□□ -0.77
CDK13-203ENST00000465643 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
CDK13-203ENST00000465643 ABCB7O75027 752 aa10.22□□□□□ -0.77
CDK13-203ENST00000465643 PKD2Q13563 968 aa10.22□□□□□ -0.77
CDK13-203ENST00000465643 HAP1P54257 671 aaPredicted RBP10.16□□□□□ -0.78
CDK13-203ENST00000465643 C1QBPQ07021 282 aaKnown RBP10.1□□□□□ -0.79
CDK13-203ENST00000465643 ZBTB12Q9Y330 459 aaPredicted RBP10.06□□□□□ -0.8
CDK13-203ENST00000465643 KLHL34Q8N239 644 aa10.06□□□□□ -0.8
CDK13-203ENST00000465643 ZNF692Q9BU19 519 aaPredicted RBP10.03□□□□□ -0.8
CDK13-203ENST00000465643 OSCARQ8IYS5 282 aa10.02□□□□□ -0.8
CDK13-203ENST00000465643 SPOCK2Q92563 424 aa10.02□□□□□ -0.81
CDK13-203ENST00000465643 NPM1P06748 294 aaKnown RBP eCLIP10.01□□□□□ -0.81
CDK13-203ENST00000465643 NISCHQ9Y2I1 1504 aa10□□□□□ -0.81
CDK13-203ENST00000465643 ECM2O94769 699 aaPredicted RBP9.99□□□□□ -0.81
CDK13-203ENST00000465643 DSG3P32926 999 aa9.99□□□□□ -0.81
CDK13-203ENST00000465643 RGL2O15211 777 aa9.95□□□□□ -0.82
CDK13-203ENST00000465643 PRKCSHP14314 528 aaPredicted RBP9.95□□□□□ -0.82
CDK13-203ENST00000465643 PLCD3Q8N3E9 789 aa9.95□□□□□ -0.82
CDK13-203ENST00000465643 PABPN1Q86U42 306 aaKnown RBP eCLIP9.94□□□□□ -0.82
CDK13-203ENST00000465643 SSUH2Q9Y2M2 353 aa9.94□□□□□ -0.82
CDK13-203ENST00000465643 STAG3Q9UJ98 1225 aa9.92□□□□□ -0.82
CDK13-203ENST00000465643 KDM2AQ9Y2K7 1162 aa9.92□□□□□ -0.82
CDK13-203ENST00000465643 PAXIP1Q6ZW49 1069 aaPredicted RBP9.92□□□□□ -0.82
CDK13-203ENST00000465643 VSIG10Q8N0Z9 540 aa9.92□□□□□ -0.82
CDK13-203ENST00000465643 SPDYE2BA6NHP3 402 aa9.91□□□□□ -0.82
CDK13-203ENST00000465643 SPDYE6P0CI01 402 aa9.91□□□□□ -0.82
CDK13-203ENST00000465643 SPDYE2Q495Y8 402 aa9.91□□□□□ -0.82
CDK13-203ENST00000465643 BBXQ8WY36 941 aaPredicted RBP9.91□□□□□ -0.82
CDK13-203ENST00000465643 MIER1Q8N108 512 aa9.9□□□□□ -0.82
CDK13-203ENST00000465643 CFAP44Q96MT7 982 aa9.9□□□□□ -0.82
CDK13-203ENST00000465643 BCANQ96GW7 911 aa9.89□□□□□ -0.83
CDK13-203ENST00000465643 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.88□□□□□ -0.83
CDK13-203ENST00000465643 POTEDQ86YR6 584 aa9.87□□□□□ -0.83
CDK13-203ENST00000465643 TAOK2Q9UL54 1235 aa9.83□□□□□ -0.84
CDK13-203ENST00000465643 CIZ1Q9ULV3 898 aaPredicted RBP9.82□□□□□ -0.84
CDK13-203ENST00000465643 TSHZ2Q9NRE2 1034 aa9.8□□□□□ -0.84
CDK13-203ENST00000465643 CHGAP10645 457 aaKnown RBP9.78□□□□□ -0.84
CDK13-203ENST00000465643 SPRYD3Q8NCJ5 442 aa9.77□□□□□ -0.85
CDK13-203ENST00000465643 TPRNQ4KMQ1 711 aa9.72□□□□□ -0.85
CDK13-203ENST00000465643 RNF25Q96BH1 459 aaPredicted RBP9.69□□□□□ -0.86
CDK13-203ENST00000465643 PLEKHG5O94827 1062 aa9.68□□□□□ -0.86
CDK13-203ENST00000465643 ZBTB47Q9UFB7 747 aaPredicted RBP9.67□□□□□ -0.86
CDK13-203ENST00000465643 HS6ST3Q8IZP7 471 aa9.63□□□□□ -0.87
CDK13-203ENST00000465643 NUBP1P53384 320 aa9.61□□□□□ -0.87
CDK13-203ENST00000465643 NKX1-1Q15270 411 aaPredicted RBP9.59□□□□□ -0.87
CDK13-203ENST00000465643 TRIM41Q8WV44 630 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms