RNA–Protein interactions for RNA: ENST00000425021.1

LINC00494-202, long intergenic non-protein coding RNA 494, humanhuman

TSL 2

Gene LINC00494, Length 438 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00494-202ENST00000425021 AEBP2Q6ZN18 517 aaPredicted RBP29.09■■■□□ 2.25
LINC00494-202ENST00000425021 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
LINC00494-202ENST00000425021 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
LINC00494-202ENST00000425021 PHF23Q9BUL5 403 aaPredicted RBP24.57■■□□□ 1.52
LINC00494-202ENST00000425021 FOXD1Q16676 465 aa23.1■■□□□ 1.29
LINC00494-202ENST00000425021 PLPPR3Q6T4P5 718 aa22.53■■□□□ 1.2
LINC00494-202ENST00000425021 PPP6R1Q9UPN7 881 aa21.76■■□□□ 1.07
LINC00494-202ENST00000425021 ADRA2BP18089 450 aa21.75■■□□□ 1.07
LINC00494-202ENST00000425021 PIAS4Q8N2W9 510 aaPredicted RBP21.72■■□□□ 1.07
LINC00494-202ENST00000425021 MSH5O43196 834 aa21.62■■□□□ 1.05
LINC00494-202ENST00000425021 POTEDQ86YR6 584 aa20.55■□□□□ 0.88
LINC00494-202ENST00000425021 SCAF1Q9H7N4 1312 aaKnown RBP20.04■□□□□ 0.8
LINC00494-202ENST00000425021 MAPK8IP2Q13387 824 aaPredicted RBP19.87■□□□□ 0.77
LINC00494-202ENST00000425021 DMRT2Q9Y5R5 561 aa19.76■□□□□ 0.75
LINC00494-202ENST00000425021 PPP4R3CPQ6ZMV5 832 aa19.74■□□□□ 0.75
LINC00494-202ENST00000425021 CNKSR2Q8WXI2 1034 aa19.34■□□□□ 0.69
LINC00494-202ENST00000425021 NCBP3Q53F19 620 aaKnown RBP19.15■□□□□ 0.66
LINC00494-202ENST00000425021 HOXD11P31277 338 aaPredicted RBP19.11■□□□□ 0.65
LINC00494-202ENST00000425021 RNF216Q9NWF9 866 aaPredicted RBP19.08■□□□□ 0.64
LINC00494-202ENST00000425021 DCAF8L1A6NGE4 600 aa19.01■□□□□ 0.63
LINC00494-202ENST00000425021 NPM3O75607 178 aaKnown RBP18.77■□□□□ 0.6
LINC00494-202ENST00000425021 KCNA4P22459 653 aa18.64■□□□□ 0.57
LINC00494-202ENST00000425021 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
LINC00494-202ENST00000425021 RNF39Q9H2S5 420 aa18.4■□□□□ 0.54
LINC00494-202ENST00000425021 CACNB1Q02641 598 aaPredicted RBP18.38■□□□□ 0.53
LINC00494-202ENST00000425021 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.3■□□□□ 0.52
LINC00494-202ENST00000425021 C1QBPQ07021 282 aaKnown RBP18.2■□□□□ 0.5
LINC00494-202ENST00000425021 U3KPZ7 1027 aaPredicted RBP17.86■□□□□ 0.45
LINC00494-202ENST00000425021 SLC4A2P04920 1241 aa17.81■□□□□ 0.44
LINC00494-202ENST00000425021 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
LINC00494-202ENST00000425021 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
LINC00494-202ENST00000425021 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.4
LINC00494-202ENST00000425021 CAPN15O75808 1086 aa17.56■□□□□ 0.4
LINC00494-202ENST00000425021 APLP2Q06481 763 aa17.56■□□□□ 0.4
LINC00494-202ENST00000425021 SPINK5Q9NQ38 1064 aaPredicted RBP17.51■□□□□ 0.39
LINC00494-202ENST00000425021 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
LINC00494-202ENST00000425021 MYCNP04198 464 aaPredicted RBP17.42■□□□□ 0.38
LINC00494-202ENST00000425021 FOXD4L1Q9NU39 408 aa17.37■□□□□ 0.37
LINC00494-202ENST00000425021 ZNF219Q9P2Y4 722 aaPredicted RBP17.34■□□□□ 0.37
LINC00494-202ENST00000425021 TRHP20396 242 aaPredicted RBP17.33■□□□□ 0.36
LINC00494-202ENST00000425021 DSG3P32926 999 aa17.32■□□□□ 0.36
LINC00494-202ENST00000425021 ABCB7O75027 752 aa17.13■□□□□ 0.33
LINC00494-202ENST00000425021 ZBTB22O15209 634 aa17.09■□□□□ 0.33
LINC00494-202ENST00000425021 POLA2Q14181 598 aa16.9■□□□□ 0.3
LINC00494-202ENST00000425021 ATF5Q9Y2D1 282 aaPredicted RBP16.88■□□□□ 0.29
LINC00494-202ENST00000425021 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
LINC00494-202ENST00000425021 ZBTB12Q9Y330 459 aaPredicted RBP16.68■□□□□ 0.26
LINC00494-202ENST00000425021 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
LINC00494-202ENST00000425021 EHMT2Q96KQ7 1210 aa16.58■□□□□ 0.24
LINC00494-202ENST00000425021 CSRNP3Q8WYN3 585 aa16.57■□□□□ 0.24
LINC00494-202ENST00000425021 FBLN2P98095 1184 aa16.37■□□□□ 0.21
LINC00494-202ENST00000425021 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
LINC00494-202ENST00000425021 AKT1S1Q96B36 256 aa16.25■□□□□ 0.19
LINC00494-202ENST00000425021 POTEHQ6S545 545 aa16.2■□□□□ 0.18
LINC00494-202ENST00000425021 MKRN4PQ13434 485 aaPredicted RBP16.13■□□□□ 0.17
LINC00494-202ENST00000425021 SPDYE2BA6NHP3 402 aa16.12■□□□□ 0.17
LINC00494-202ENST00000425021 SPDYE6P0CI01 402 aa16.12■□□□□ 0.17
LINC00494-202ENST00000425021 SPDYE2Q495Y8 402 aa16.12■□□□□ 0.17
LINC00494-202ENST00000425021 CHRDL2Q6WN34 429 aa16.09■□□□□ 0.17
LINC00494-202ENST00000425021 REM2Q8IYK8 340 aaPredicted RBP16.07■□□□□ 0.16
LINC00494-202ENST00000425021 NISCHQ9Y2I1 1504 aa16.07■□□□□ 0.16
LINC00494-202ENST00000425021 ZNF692Q9BU19 519 aaPredicted RBP15.98■□□□□ 0.15
LINC00494-202ENST00000425021 SSUH2Q9Y2M2 353 aa15.89■□□□□ 0.13
LINC00494-202ENST00000425021 PITPNM1O00562 1244 aa15.88■□□□□ 0.13
LINC00494-202ENST00000425021 SPDYE1Q8NFV5 336 aaPredicted RBP15.8■□□□□ 0.12
LINC00494-202ENST00000425021 CLEC11AQ9Y240 323 aa15.75■□□□□ 0.11
LINC00494-202ENST00000425021 PIP4P2Q8N4L2 257 aa15.74■□□□□ 0.11
LINC00494-202ENST00000425021 PABPN1Q86U42 306 aaKnown RBP eCLIP15.73■□□□□ 0.11
LINC00494-202ENST00000425021 FXR2P51116 673 aaKnown RBP eCLIP15.68■□□□□ 0.1
LINC00494-202ENST00000425021 SPDYE4A6NLX3 237 aa15.6■□□□□ 0.09
LINC00494-202ENST00000425021 PRR29P0C7W0 189 aa15.53■□□□□ 0.08
LINC00494-202ENST00000425021 PRKAR2AP13861 404 aaKnown RBP15.51■□□□□ 0.07
LINC00494-202ENST00000425021 HAX1O00165 279 aa15.44■□□□□ 0.06
LINC00494-202ENST00000425021 STAG3Q9UJ98 1225 aa15.42■□□□□ 0.06
LINC00494-202ENST00000425021 CHADLQ6NUI6 762 aa15.35■□□□□ 0.05
LINC00494-202ENST00000425021 SP7Q8TDD2 431 aaPredicted RBP15.32■□□□□ 0.04
LINC00494-202ENST00000425021 PROM2Q8N271 834 aa15.18■□□□□ 0.02
LINC00494-202ENST00000425021 FARP1Q9Y4F1 1045 aaPredicted RBP15.18■□□□□ 0.02
LINC00494-202ENST00000425021 C19orf67A6NJJ6 358 aa15.17■□□□□ 0.02
LINC00494-202ENST00000425021 EVX2Q03828 476 aa15.14■□□□□ 0.01
LINC00494-202ENST00000425021 CREBZFQ9NS37 354 aa15.13■□□□□ 0.01
LINC00494-202ENST00000425021 FKBP8Q14318 412 aa15.09■□□□□ 0.01
LINC00494-202ENST00000425021 CD44P16070 742 aaKnown RBP15.05■□□□□ -0
LINC00494-202ENST00000425021 NPM1P06748 294 aaKnown RBP eCLIP14.97□□□□□ -0.01
LINC00494-202ENST00000425021 PLEKHG5O94827 1062 aa14.94□□□□□ -0.02
LINC00494-202ENST00000425021 PAK3O75914 559 aaPredicted RBP14.9□□□□□ -0.02
LINC00494-202ENST00000425021 GABBR2O75899 941 aa14.88□□□□□ -0.03
LINC00494-202ENST00000425021 MIER1Q8N108 512 aa14.88□□□□□ -0.03
LINC00494-202ENST00000425021 ZRANB1Q9UGI0 708 aa14.88□□□□□ -0.03
LINC00494-202ENST00000425021 MNX1P50219 401 aaPredicted RBP14.87□□□□□ -0.03
LINC00494-202ENST00000425021 CLCN6P51797 869 aa14.85□□□□□ -0.03
LINC00494-202ENST00000425021 PLCD3Q8N3E9 789 aa14.82□□□□□ -0.04
LINC00494-202ENST00000425021 ZNF579Q8NAF0 562 aaKnown RBP14.8□□□□□ -0.04
LINC00494-202ENST00000425021 FBXO3Q9UK99 471 aa14.78□□□□□ -0.04
LINC00494-202ENST00000425021 ZBTB47Q9UFB7 747 aaPredicted RBP14.73□□□□□ -0.05
LINC00494-202ENST00000425021 TSPYL2Q9H2G4 693 aaPredicted RBP14.66□□□□□ -0.06
LINC00494-202ENST00000425021 PHF12Q96QT6 1004 aa14.65□□□□□ -0.06
LINC00494-202ENST00000425021 DCBLD2Q96PD2 775 aa14.62□□□□□ -0.07
LINC00494-202ENST00000425021 GALR2O43603 387 aaPredicted RBP14.57□□□□□ -0.08
LINC00494-202ENST00000425021 RASEFQ8IZ41 740 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms