RNA–Protein interactions for RNA: ENST00000424555.5

SEMA3A-203, Transcript of semaphorin 3A, humanhuman

TSL 4

Gene SEMA3A, Length 568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-203ENST00000424555 AEBP2Q6ZN18 517 aaPredicted RBP28.89■■■□□ 2.22
SEMA3A-203ENST00000424555 CHIC1Q5VXU3 224 aa27.33■■□□□ 1.97
SEMA3A-203ENST00000424555 SENP3Q9H4L4 574 aaPredicted RBP24.49■■□□□ 1.51
SEMA3A-203ENST00000424555 PHF23Q9BUL5 403 aaPredicted RBP24.25■■□□□ 1.47
SEMA3A-203ENST00000424555 FOXD1Q16676 465 aa22.94■■□□□ 1.26
SEMA3A-203ENST00000424555 PLPPR3Q6T4P5 718 aa21.76■■□□□ 1.07
SEMA3A-203ENST00000424555 PPP6R1Q9UPN7 881 aa21.5■■□□□ 1.03
SEMA3A-203ENST00000424555 ADRA2BP18089 450 aa21.38■■□□□ 1.01
SEMA3A-203ENST00000424555 MSH5O43196 834 aa21.34■■□□□ 1.01
SEMA3A-203ENST00000424555 PIAS4Q8N2W9 510 aaPredicted RBP21.34■■□□□ 1.01
SEMA3A-203ENST00000424555 POTEDQ86YR6 584 aa20.96■□□□□ 0.95
SEMA3A-203ENST00000424555 MAPK8IP2Q13387 824 aaPredicted RBP19.68■□□□□ 0.74
SEMA3A-203ENST00000424555 DMRT2Q9Y5R5 561 aa19.47■□□□□ 0.71
SEMA3A-203ENST00000424555 SCAF1Q9H7N4 1312 aaKnown RBP19.4■□□□□ 0.7
SEMA3A-203ENST00000424555 PPP4R3CPQ6ZMV5 832 aa19.13■□□□□ 0.65
SEMA3A-203ENST00000424555 HOXD11P31277 338 aaPredicted RBP18.75■□□□□ 0.59
SEMA3A-203ENST00000424555 CNKSR2Q8WXI2 1034 aa18.73■□□□□ 0.59
SEMA3A-203ENST00000424555 DCAF8L1A6NGE4 600 aa18.6■□□□□ 0.57
SEMA3A-203ENST00000424555 RNF216Q9NWF9 866 aaPredicted RBP18.57■□□□□ 0.56
SEMA3A-203ENST00000424555 CACNB1Q02641 598 aaPredicted RBP18.34■□□□□ 0.53
SEMA3A-203ENST00000424555 RNF39Q9H2S5 420 aa18.29■□□□□ 0.52
SEMA3A-203ENST00000424555 NCBP3Q53F19 620 aaKnown RBP18.28■□□□□ 0.52
SEMA3A-203ENST00000424555 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
SEMA3A-203ENST00000424555 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
SEMA3A-203ENST00000424555 C1QBPQ07021 282 aaKnown RBP17.96■□□□□ 0.47
SEMA3A-203ENST00000424555 KCNA4P22459 653 aa17.81■□□□□ 0.44
SEMA3A-203ENST00000424555 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.8■□□□□ 0.44
SEMA3A-203ENST00000424555 U3KPZ7 1027 aaPredicted RBP17.51■□□□□ 0.39
SEMA3A-203ENST00000424555 SLC4A2P04920 1241 aa17.39■□□□□ 0.37
SEMA3A-203ENST00000424555 SPINK5Q9NQ38 1064 aaPredicted RBP17.29■□□□□ 0.36
SEMA3A-203ENST00000424555 CAPN15O75808 1086 aa17.16■□□□□ 0.34
SEMA3A-203ENST00000424555 DSG3P32926 999 aa17.13■□□□□ 0.33
SEMA3A-203ENST00000424555 TRHP20396 242 aaPredicted RBP16.9■□□□□ 0.3
SEMA3A-203ENST00000424555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.84■□□□□ 0.29
SEMA3A-203ENST00000424555 HNRNPUL2Q1KMD3 747 aaKnown RBP16.84■□□□□ 0.29
SEMA3A-203ENST00000424555 APLP2Q06481 763 aa16.82■□□□□ 0.28
SEMA3A-203ENST00000424555 ABCB7O75027 752 aa16.81■□□□□ 0.28
SEMA3A-203ENST00000424555 ZNF219Q9P2Y4 722 aaPredicted RBP16.8■□□□□ 0.28
SEMA3A-203ENST00000424555 SAMD1Q6SPF0 538 aaPredicted RBP16.79■□□□□ 0.28
SEMA3A-203ENST00000424555 SLC4A1APQ9BWU0 796 aaKnown RBP16.73■□□□□ 0.27
SEMA3A-203ENST00000424555 MYCNP04198 464 aaPredicted RBP16.7■□□□□ 0.26
SEMA3A-203ENST00000424555 FOXD4L1Q9NU39 408 aa16.54■□□□□ 0.24
SEMA3A-203ENST00000424555 POLA2Q14181 598 aa16.47■□□□□ 0.23
SEMA3A-203ENST00000424555 ATF5Q9Y2D1 282 aaPredicted RBP16.47■□□□□ 0.23
SEMA3A-203ENST00000424555 ZBTB22O15209 634 aa16.43■□□□□ 0.22
SEMA3A-203ENST00000424555 POTEHQ6S545 545 aa16.38■□□□□ 0.21
SEMA3A-203ENST00000424555 RBM42Q9BTD8 480 aaKnown RBP16.21■□□□□ 0.19
SEMA3A-203ENST00000424555 ATXN8OSP0DMR3 200 aa16.02■□□□□ 0.16
SEMA3A-203ENST00000424555 ZBTB12Q9Y330 459 aaPredicted RBP16.01■□□□□ 0.15
SEMA3A-203ENST00000424555 CHRDL2Q6WN34 429 aa15.95■□□□□ 0.14
SEMA3A-203ENST00000424555 OSCARQ8IYS5 282 aa15.93■□□□□ 0.14
SEMA3A-203ENST00000424555 AKT1S1Q96B36 256 aa15.9■□□□□ 0.14
SEMA3A-203ENST00000424555 REM2Q8IYK8 340 aaPredicted RBP15.8■□□□□ 0.12
SEMA3A-203ENST00000424555 MKRN4PQ13434 485 aaPredicted RBP15.7■□□□□ 0.1
SEMA3A-203ENST00000424555 PITPNM1O00562 1244 aa15.64■□□□□ 0.09
SEMA3A-203ENST00000424555 FBLN2P98095 1184 aa15.64■□□□□ 0.09
SEMA3A-203ENST00000424555 CSRNP3Q8WYN3 585 aa15.63■□□□□ 0.09
SEMA3A-203ENST00000424555 PIP4P2Q8N4L2 257 aa15.6■□□□□ 0.09
SEMA3A-203ENST00000424555 SPDYE2BA6NHP3 402 aa15.58■□□□□ 0.08
SEMA3A-203ENST00000424555 SPDYE6P0CI01 402 aa15.58■□□□□ 0.08
SEMA3A-203ENST00000424555 SPDYE2Q495Y8 402 aa15.58■□□□□ 0.08
SEMA3A-203ENST00000424555 FXR2P51116 673 aaKnown RBP eCLIP15.51■□□□□ 0.07
SEMA3A-203ENST00000424555 SSUH2Q9Y2M2 353 aa15.43■□□□□ 0.06
SEMA3A-203ENST00000424555 ZNF692Q9BU19 519 aaPredicted RBP15.4■□□□□ 0.06
SEMA3A-203ENST00000424555 SP7Q8TDD2 431 aaPredicted RBP15.34■□□□□ 0.05
SEMA3A-203ENST00000424555 EHMT2Q96KQ7 1210 aa15.34■□□□□ 0.05
SEMA3A-203ENST00000424555 SPDYE1Q8NFV5 336 aaPredicted RBP15.3■□□□□ 0.04
SEMA3A-203ENST00000424555 CLEC11AQ9Y240 323 aa15.29■□□□□ 0.04
SEMA3A-203ENST00000424555 HAX1O00165 279 aa15.27■□□□□ 0.04
SEMA3A-203ENST00000424555 EVX2Q03828 476 aa15.23■□□□□ 0.03
SEMA3A-203ENST00000424555 PRKAR2AP13861 404 aaKnown RBP15.2■□□□□ 0.02
SEMA3A-203ENST00000424555 PABPN1Q86U42 306 aaKnown RBP eCLIP15.2■□□□□ 0.02
SEMA3A-203ENST00000424555 CHADLQ6NUI6 762 aa15.07■□□□□ 0
SEMA3A-203ENST00000424555 C19orf67A6NJJ6 358 aa15.02■□□□□ -0
SEMA3A-203ENST00000424555 PRR29P0C7W0 189 aa15.02■□□□□ -0
SEMA3A-203ENST00000424555 SPDYE4A6NLX3 237 aa14.84□□□□□ -0.03
SEMA3A-203ENST00000424555 FARP1Q9Y4F1 1045 aaPredicted RBP14.82□□□□□ -0.04
SEMA3A-203ENST00000424555 GABBR2O75899 941 aa14.8□□□□□ -0.04
SEMA3A-203ENST00000424555 NISCHQ9Y2I1 1504 aa14.75□□□□□ -0.05
SEMA3A-203ENST00000424555 CREBZFQ9NS37 354 aa14.74□□□□□ -0.05
SEMA3A-203ENST00000424555 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.05
SEMA3A-203ENST00000424555 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
SEMA3A-203ENST00000424555 POTEIP0CG38 1075 aa14.56□□□□□ -0.08
SEMA3A-203ENST00000424555 PROM2Q8N271 834 aa14.55□□□□□ -0.08
SEMA3A-203ENST00000424555 MNX1P50219 401 aaPredicted RBP14.52□□□□□ -0.09
SEMA3A-203ENST00000424555 ZRANB1Q9UGI0 708 aa14.5□□□□□ -0.09
SEMA3A-203ENST00000424555 ZNF579Q8NAF0 562 aaKnown RBP14.49□□□□□ -0.09
SEMA3A-203ENST00000424555 CLCN6P51797 869 aa14.43□□□□□ -0.1
SEMA3A-203ENST00000424555 LHX8Q68G74 356 aa14.4□□□□□ -0.1
SEMA3A-203ENST00000424555 GALR2O43603 387 aaPredicted RBP14.36□□□□□ -0.11
SEMA3A-203ENST00000424555 PHF12Q96QT6 1004 aa14.35□□□□□ -0.11
SEMA3A-203ENST00000424555 NPM1P06748 294 aaKnown RBP eCLIP14.34□□□□□ -0.11
SEMA3A-203ENST00000424555 DCBLD2Q96PD2 775 aa14.3□□□□□ -0.12
SEMA3A-203ENST00000424555 PAK3O75914 559 aaPredicted RBP14.27□□□□□ -0.13
SEMA3A-203ENST00000424555 TSPYL2Q9H2G4 693 aaPredicted RBP14.16□□□□□ -0.14
SEMA3A-203ENST00000424555 MIER1Q8N108 512 aa14.15□□□□□ -0.14
SEMA3A-203ENST00000424555 PELP1Q8IZL8 1130 aaKnown RBP14.14□□□□□ -0.15
SEMA3A-203ENST00000424555 MS4A3Q96HJ5 214 aa14.14□□□□□ -0.15
SEMA3A-203ENST00000424555 CCDC61Q9Y6R9 512 aa14.13□□□□□ -0.15
SEMA3A-203ENST00000424555 FKBP8Q14318 412 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms