RNA–Protein interactions for RNA: ENST00000389138.7

ERCC4-202, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 2

Gene ERCC4, Length 2,106 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-202ENST00000389138 AEBP2Q6ZN18 517 aaPredicted RBP18.06■□□□□ 0.48
ERCC4-202ENST00000389138 CHIC1Q5VXU3 224 aa17.79■□□□□ 0.44
ERCC4-202ENST00000389138 PHF23Q9BUL5 403 aaPredicted RBP15.58■□□□□ 0.08
ERCC4-202ENST00000389138 SENP3Q9H4L4 574 aaPredicted RBP15.43■□□□□ 0.06
ERCC4-202ENST00000389138 PLPPR3Q6T4P5 718 aa14.5□□□□□ -0.09
ERCC4-202ENST00000389138 FOXD1Q16676 465 aa14.24□□□□□ -0.13
ERCC4-202ENST00000389138 ADRA2BP18089 450 aa13.71□□□□□ -0.21
ERCC4-202ENST00000389138 PPP6R1Q9UPN7 881 aa13.7□□□□□ -0.22
ERCC4-202ENST00000389138 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.26
ERCC4-202ENST00000389138 MSH5O43196 834 aa13.2□□□□□ -0.3
ERCC4-202ENST00000389138 POTEDQ86YR6 584 aa12.96□□□□□ -0.33
ERCC4-202ENST00000389138 PPP4R3CPQ6ZMV5 832 aa12.76□□□□□ -0.37
ERCC4-202ENST00000389138 SCAF1Q9H7N4 1312 aaKnown RBP12.68□□□□□ -0.38
ERCC4-202ENST00000389138 SLC24A1O60721 1099 aa12.59□□□□□ -0.39
ERCC4-202ENST00000389138 NCBP3Q53F19 620 aaKnown RBP12.52□□□□□ -0.41
ERCC4-202ENST00000389138 KCNA4P22459 653 aa12.47□□□□□ -0.41
ERCC4-202ENST00000389138 CNKSR2Q8WXI2 1034 aa12.42□□□□□ -0.42
ERCC4-202ENST00000389138 MAPK8IP2Q13387 824 aaPredicted RBP12.4□□□□□ -0.43
ERCC4-202ENST00000389138 DMRT2Q9Y5R5 561 aa12.31□□□□□ -0.44
ERCC4-202ENST00000389138 NPM3O75607 178 aaKnown RBP12.23□□□□□ -0.45
ERCC4-202ENST00000389138 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
ERCC4-202ENST00000389138 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
ERCC4-202ENST00000389138 HOXD11P31277 338 aaPredicted RBP12.09□□□□□ -0.47
ERCC4-202ENST00000389138 DNAJC5BQ9UF47 199 aa11.98□□□□□ -0.49
ERCC4-202ENST00000389138 SLC4A1APQ9BWU0 796 aaKnown RBP11.94□□□□□ -0.5
ERCC4-202ENST00000389138 DCAF8L1A6NGE4 600 aa11.72□□□□□ -0.53
ERCC4-202ENST00000389138 RTN4Q9NQC3 1192 aaKnown RBP11.65□□□□□ -0.55
ERCC4-202ENST00000389138 FOXD4L1Q9NU39 408 aa11.54□□□□□ -0.56
ERCC4-202ENST00000389138 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.57
ERCC4-202ENST00000389138 SLC4A2P04920 1241 aa11.51□□□□□ -0.57
ERCC4-202ENST00000389138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.51□□□□□ -0.57
ERCC4-202ENST00000389138 ZBTB22O15209 634 aa11.44□□□□□ -0.58
ERCC4-202ENST00000389138 NISCHQ9Y2I1 1504 aa11.43□□□□□ -0.58
ERCC4-202ENST00000389138 MYCNP04198 464 aaPredicted RBP11.36□□□□□ -0.59
ERCC4-202ENST00000389138 AMER1Q5JTC6 1135 aaPredicted RBP11.36□□□□□ -0.59
ERCC4-202ENST00000389138 U3KPZ7 1027 aaPredicted RBP11.29□□□□□ -0.6
ERCC4-202ENST00000389138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.29□□□□□ -0.6
ERCC4-202ENST00000389138 HNRNPUL2Q1KMD3 747 aaKnown RBP11.29□□□□□ -0.6
ERCC4-202ENST00000389138 RNF39Q9H2S5 420 aa11.26□□□□□ -0.61
ERCC4-202ENST00000389138 SAMD1Q6SPF0 538 aaPredicted RBP11.22□□□□□ -0.61
ERCC4-202ENST00000389138 APLP2Q06481 763 aa11.2□□□□□ -0.62
ERCC4-202ENST00000389138 ATXN8OSP0DMR3 200 aa11.18□□□□□ -0.62
ERCC4-202ENST00000389138 C1QBPQ07021 282 aaKnown RBP11.18□□□□□ -0.62
ERCC4-202ENST00000389138 CACNB1Q02641 598 aaPredicted RBP11.14□□□□□ -0.63
ERCC4-202ENST00000389138 DAXXQ9UER7 740 aaPredicted RBP11.14□□□□□ -0.63
ERCC4-202ENST00000389138 PRKCSHP14314 528 aaPredicted RBP11□□□□□ -0.65
ERCC4-202ENST00000389138 ZNF219Q9P2Y4 722 aaPredicted RBP10.95□□□□□ -0.66
ERCC4-202ENST00000389138 ATF5Q9Y2D1 282 aaPredicted RBP10.94□□□□□ -0.66
ERCC4-202ENST00000389138 CAPN15O75808 1086 aa10.93□□□□□ -0.66
ERCC4-202ENST00000389138 SPINK5Q9NQ38 1064 aaPredicted RBP10.92□□□□□ -0.66
ERCC4-202ENST00000389138 TRHP20396 242 aaPredicted RBP10.87□□□□□ -0.67
ERCC4-202ENST00000389138 ABCC9O60706 1549 aa10.86□□□□□ -0.67
ERCC4-202ENST00000389138 DSG3P32926 999 aa10.73□□□□□ -0.69
ERCC4-202ENST00000389138 POLA2Q14181 598 aa10.72□□□□□ -0.69
ERCC4-202ENST00000389138 TIMELESSQ9UNS1 1208 aa10.69□□□□□ -0.7
ERCC4-202ENST00000389138 ABCB7O75027 752 aa10.68□□□□□ -0.7
ERCC4-202ENST00000389138 TAOK2Q9UL54 1235 aa10.68□□□□□ -0.7
ERCC4-202ENST00000389138 ARXQ96QS3 562 aa10.66□□□□□ -0.7
ERCC4-202ENST00000389138 ZBTB12Q9Y330 459 aaPredicted RBP10.66□□□□□ -0.7
ERCC4-202ENST00000389138 FBLN2P98095 1184 aa10.61□□□□□ -0.71
ERCC4-202ENST00000389138 CCDC180Q9P1Z9 1646 aa10.56□□□□□ -0.72
ERCC4-202ENST00000389138 BCANQ96GW7 911 aa10.55□□□□□ -0.72
ERCC4-202ENST00000389138 TULP1O00294 542 aaPredicted RBP10.51□□□□□ -0.73
ERCC4-202ENST00000389138 PLCB2Q00722 1185 aa10.5□□□□□ -0.73
ERCC4-202ENST00000389138 MKRN4PQ13434 485 aaPredicted RBP10.49□□□□□ -0.73
ERCC4-202ENST00000389138 TPRNQ4KMQ1 711 aa10.48□□□□□ -0.73
ERCC4-202ENST00000389138 FKBP8Q14318 412 aa10.38□□□□□ -0.75
ERCC4-202ENST00000389138 SPDYE4A6NLX3 237 aa10.34□□□□□ -0.75
ERCC4-202ENST00000389138 SPDYE2BA6NHP3 402 aa10.33□□□□□ -0.76
ERCC4-202ENST00000389138 SPDYE6P0CI01 402 aa10.33□□□□□ -0.76
ERCC4-202ENST00000389138 SPDYE2Q495Y8 402 aa10.33□□□□□ -0.76
ERCC4-202ENST00000389138 OSCARQ8IYS5 282 aa10.33□□□□□ -0.76
ERCC4-202ENST00000389138 HAP1P54257 671 aaPredicted RBP10.32□□□□□ -0.76
ERCC4-202ENST00000389138 HOMEZQ8IX15 550 aa10.31□□□□□ -0.76
ERCC4-202ENST00000389138 RBM42Q9BTD8 480 aaKnown RBP10.3□□□□□ -0.76
ERCC4-202ENST00000389138 ZNF692Q9BU19 519 aaPredicted RBP10.27□□□□□ -0.77
ERCC4-202ENST00000389138 GTF3C3Q9Y5Q9 886 aa10.24□□□□□ -0.77
ERCC4-202ENST00000389138 SSUH2Q9Y2M2 353 aa10.23□□□□□ -0.77
ERCC4-202ENST00000389138 RB1CC1Q8TDY2 1594 aa10.2□□□□□ -0.78
ERCC4-202ENST00000389138 PROM2Q8N271 834 aa10.19□□□□□ -0.78
ERCC4-202ENST00000389138 AKT1S1Q96B36 256 aa10.17□□□□□ -0.78
ERCC4-202ENST00000389138 VSIG10Q8N0Z9 540 aa10.13□□□□□ -0.79
ERCC4-202ENST00000389138 RANGAP1P46060 587 aaPredicted RBP10.13□□□□□ -0.79
ERCC4-202ENST00000389138 POTEHQ6S545 545 aa10.12□□□□□ -0.79
ERCC4-202ENST00000389138 PABPN1Q86U42 306 aaKnown RBP eCLIP10.11□□□□□ -0.79
ERCC4-202ENST00000389138 UNC13AQ9UPW8 1703 aa10.09□□□□□ -0.79
ERCC4-202ENST00000389138 FBXO3Q9UK99 471 aa10.09□□□□□ -0.79
ERCC4-202ENST00000389138 KDM2AQ9Y2K7 1162 aa10.09□□□□□ -0.79
ERCC4-202ENST00000389138 PODXL2Q9NZ53 605 aa10.09□□□□□ -0.79
ERCC4-202ENST00000389138 KLHL34Q8N239 644 aa10.07□□□□□ -0.8
ERCC4-202ENST00000389138 STAG3Q9UJ98 1225 aa10.06□□□□□ -0.8
ERCC4-202ENST00000389138 TMEM132AQ24JP5 1023 aa10.02□□□□□ -0.81
ERCC4-202ENST00000389138 REM2Q8IYK8 340 aaPredicted RBP10.02□□□□□ -0.81
ERCC4-202ENST00000389138 SPDYE1Q8NFV5 336 aaPredicted RBP10.01□□□□□ -0.81
ERCC4-202ENST00000389138 NACADO15069 1562 aa10.01□□□□□ -0.81
ERCC4-202ENST00000389138 DNAJC5Q9H3Z4 198 aa10□□□□□ -0.81
ERCC4-202ENST00000389138 ERICH6Q7L0X2 663 aa9.97□□□□□ -0.81
ERCC4-202ENST00000389138 PELP1Q8IZL8 1130 aaKnown RBP9.95□□□□□ -0.82
ERCC4-202ENST00000389138 BICRAQ9NZM4 1560 aa9.94□□□□□ -0.82
ERCC4-202ENST00000389138 TTBK1Q5TCY1 1321 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms