RNA–Protein interactions for RNA: ENSMUST00000092215.5

Ccdc38-201, Transcript of Coiled-coil domain-containing protein 38, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc38, Length 3,656 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38-201ENSMUST00000092215 NischQ80TM9 1593 aa20.76■□□□□ 0.91
Ccdc38-201ENSMUST00000092215 Gm35339A0A140LHH9 1649 aa20.45■□□□□ 0.86
Ccdc38-201ENSMUST00000092215 Abcc9P70170 1546 aa20■□□□□ 0.79
Ccdc38-201ENSMUST00000092215 Abcc8B2RUS7 1588 aa19.85■□□□□ 0.77
Ccdc38-201ENSMUST00000092215 Rhox8Q6VSS7 320 aa18.99■□□□□ 0.63
Ccdc38-201ENSMUST00000092215 ScribQ80U72 1612 aa18.85■□□□□ 0.61
Ccdc38-201ENSMUST00000092215 Kdm5dQ62240 1548 aa18.42■□□□□ 0.54
Ccdc38-201ENSMUST00000092215 NacadQ5SWP3 1504 aa18.38■□□□□ 0.53
Ccdc38-201ENSMUST00000092215 Dcaf1Q80TR8 1506 aa18.22■□□□□ 0.51
Ccdc38-201ENSMUST00000092215 Rb1cc1Q9ESK9 1588 aa18.13■□□□□ 0.49
Ccdc38-201ENSMUST00000092215 Sycp2Q9CUU3 1500 aa17.98■□□□□ 0.47
Ccdc38-201ENSMUST00000092215 Baz1aO88379 1555 aa17.84■□□□□ 0.45
Ccdc38-201ENSMUST00000092215 Zcchc6Q5BLK4 1491 aaKnown RBP17.83■□□□□ 0.44
Ccdc38-201ENSMUST00000092215 Ccdc136Q3TVA9 1136 aa17.67■□□□□ 0.42
Ccdc38-201ENSMUST00000092215 BicraF8VPZ9 1578 aa17.64■□□□□ 0.41
Ccdc38-201ENSMUST00000092215 Crybg2B7ZCC2 1516 aa17.55■□□□□ 0.4
Ccdc38-201ENSMUST00000092215 Ccdc180J3QNE4 1664 aa17.55■□□□□ 0.4
Ccdc38-201ENSMUST00000092215 Rtl1Q7M732 1744 aa17.38■□□□□ 0.37
Ccdc38-201ENSMUST00000092215 Smarca2Q6DIC0 1577 aa17.32■□□□□ 0.36
Ccdc38-201ENSMUST00000092215 Cecr2E9Q2Z1 1453 aa17.29■□□□□ 0.36
Ccdc38-201ENSMUST00000092215 Trim41Q5NCC3 630 aa17.19■□□□□ 0.34
Ccdc38-201ENSMUST00000092215 Pds5bQ4VA53 1446 aaKnown RBP17.16■□□□□ 0.34
Ccdc38-201ENSMUST00000092215 Esf1Q3V1V3 845 aaKnown RBP17.13■□□□□ 0.33
Ccdc38-201ENSMUST00000092215 Atad2bE9Q166 1460 aaKnown RBP17.06■□□□□ 0.32
Ccdc38-201ENSMUST00000092215 Smarca4Q3TKT4 1613 aaKnown RBP17.05■□□□□ 0.32
Ccdc38-201ENSMUST00000092215 Brd4Q9ESU6 1400 aaKnown RBP17.04■□□□□ 0.32
Ccdc38-201ENSMUST00000092215 Cngb1E1AZ71 1325 aa16.98■□□□□ 0.31
Ccdc38-201ENSMUST00000092215 Iqgap2Q3UQ44 1575 aa16.94■□□□□ 0.3
Ccdc38-201ENSMUST00000092215 Synj1Q8CHC4 1574 aa16.92■□□□□ 0.3
Ccdc38-201ENSMUST00000092215 CftrP26361 1476 aa16.91■□□□□ 0.3
Ccdc38-201ENSMUST00000092215 Dnajc5bQ9CQ94 199 aa16.91■□□□□ 0.3
Ccdc38-201ENSMUST00000092215 Ercc6F8VPZ5 1481 aa16.88■□□□□ 0.29
Ccdc38-201ENSMUST00000092215 Cttnbp2B9EJA2 1648 aa16.77■□□□□ 0.27
Ccdc38-201ENSMUST00000092215 Frmpd1A2AKB4 1549 aa16.73■□□□□ 0.27
Ccdc38-201ENSMUST00000092215 Ubl4bQ9CQ84 188 aa16.68■□□□□ 0.26
Ccdc38-201ENSMUST00000092215 Thoc2B1AZI6 1594 aaKnown RBP16.67■□□□□ 0.26
Ccdc38-201ENSMUST00000092215 Wdr62Q3U3T8 1523 aa16.67■□□□□ 0.26
Ccdc38-201ENSMUST00000092215 Cc2d2aQ8CFW7 1633 aa16.61■□□□□ 0.25
Ccdc38-201ENSMUST00000092215 Golga3P55937 1487 aa16.6■□□□□ 0.25
Ccdc38-201ENSMUST00000092215 Phldb1Q6PDH0 1371 aaKnown RBP16.59■□□□□ 0.25
Ccdc38-201ENSMUST00000092215 Il27Q8K3I6 234 aa16.55■□□□□ 0.24
Ccdc38-201ENSMUST00000092215 Kif15Q6P9L6 1387 aa16.49■□□□□ 0.23
Ccdc38-201ENSMUST00000092215 Chic1Q8CBW7 227 aa16.48■□□□□ 0.23
Ccdc38-201ENSMUST00000092215 Rsf1E9PWW9 1441 aaKnown RBP16.47■□□□□ 0.23
Ccdc38-201ENSMUST00000092215 HrcG5E8J6 738 aa16.43■□□□□ 0.22
Ccdc38-201ENSMUST00000092215 Gab3Q8BSM5 595 aa16.42■□□□□ 0.22
Ccdc38-201ENSMUST00000092215 Fam135aQ6NS59 1506 aa16.41■□□□□ 0.22
Ccdc38-201ENSMUST00000092215 Npm1Q61937 292 aaKnown RBP16.37■□□□□ 0.21
Ccdc38-201ENSMUST00000092215 Ccdc88bQ4QRL3 1481 aa16.37■□□□□ 0.21
Ccdc38-201ENSMUST00000092215 Unc13aQ4KUS2 1712 aa16.34■□□□□ 0.21
Ccdc38-201ENSMUST00000092215 Cux2P70298 1426 aa16.32■□□□□ 0.2
Ccdc38-201ENSMUST00000092215 Top2bQ64511 1612 aa16.32■□□□□ 0.2
Ccdc38-201ENSMUST00000092215 Fmn1Q05860 1466 aa16.27■□□□□ 0.2
Ccdc38-201ENSMUST00000092215 Mrc2Q64449 1479 aa16.21■□□□□ 0.18
Ccdc38-201ENSMUST00000092215 Lamc3Q9R0B6 1581 aa16.19■□□□□ 0.18
Ccdc38-201ENSMUST00000092215 Npm2Q80W85 207 aa16.18■□□□□ 0.18
Ccdc38-201ENSMUST00000092215 Ccdc18Q640L5 1455 aa16.17■□□□□ 0.18
Ccdc38-201ENSMUST00000092215 Cep164Q5DU05 1446 aa16.16■□□□□ 0.18
Ccdc38-201ENSMUST00000092215 Zeb1Q64318 1117 aa16.13■□□□□ 0.17
Ccdc38-201ENSMUST00000092215 TnnQ80Z71 1560 aa16.06■□□□□ 0.16
Ccdc38-201ENSMUST00000092215 Myt1lP97500 1187 aa16.05■□□□□ 0.16
Ccdc38-201ENSMUST00000092215 Camsap1A2AHC3 1581 aa16.03■□□□□ 0.16
Ccdc38-201ENSMUST00000092215 LrpprcQ6PB66 1392 aaKnown RBP16.03■□□□□ 0.16
Ccdc38-201ENSMUST00000092215 Baz1bQ9Z277 1479 aa16.03■□□□□ 0.16
Ccdc38-201ENSMUST00000092215 Dhx29Q6PGC1 1365 aaKnown RBP16■□□□□ 0.15
Ccdc38-201ENSMUST00000092215 Top2aQ01320 1528 aaKnown RBP15.99■□□□□ 0.15
Ccdc38-201ENSMUST00000092215 Kif21aQ9QXL2 1672 aa15.93■□□□□ 0.14
Ccdc38-201ENSMUST00000092215 Grin2bQ01097 1482 aa15.9■□□□□ 0.14
Ccdc38-201ENSMUST00000092215 PogzQ8BZH4 1409 aaKnown RBP15.89■□□□□ 0.13
Ccdc38-201ENSMUST00000092215 PtprkP35822 1457 aa15.87■□□□□ 0.13
Ccdc38-201ENSMUST00000092215 Duox2A2AQ99 1517 aa15.87■□□□□ 0.13
Ccdc38-201ENSMUST00000092215 Plb1Q3TTY0 1478 aa15.84■□□□□ 0.13
Ccdc38-201ENSMUST00000092215 Urb2E9Q7L1 1524 aaKnown RBP15.83■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Rapgef2Q8CHG7 1496 aa15.82■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Ehmt2Q9Z148 1263 aaKnown RBP15.81■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Crocc2F6XLV1 1638 aa15.79■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Shroom4Q1W617 1475 aa15.78■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 NrkQ9R0G8 1455 aa15.78■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Efcab5A0JP43 1406 aa15.78■□□□□ 0.12
Ccdc38-201ENSMUST00000092215 Lrriq1Q0P5X1 1673 aa15.75■□□□□ 0.11
Ccdc38-201ENSMUST00000092215 Rad54l2Q99NG0 1466 aa15.75■□□□□ 0.11
Ccdc38-201ENSMUST00000092215 Cep162Q6ZQ06 1403 aa15.74■□□□□ 0.11
Ccdc38-201ENSMUST00000092215 Ap3b1Q9Z1T1 1105 aa15.68■□□□□ 0.1
Ccdc38-201ENSMUST00000092215 Samd9lQ69Z37 1561 aa15.68■□□□□ 0.1
Ccdc38-201ENSMUST00000092215 Arhgap35Q91YM2 1499 aa15.63■□□□□ 0.09
Ccdc38-201ENSMUST00000092215 Ift140E9PY46 1464 aa15.61■□□□□ 0.09
Ccdc38-201ENSMUST00000092215 Clip1Q922J3 1391 aa15.61■□□□□ 0.09
Ccdc38-201ENSMUST00000092215 Mroh2bQ7M6Y6 1581 aa15.6■□□□□ 0.09
Ccdc38-201ENSMUST00000092215 Disp1Q3TDN0 1521 aa15.6■□□□□ 0.09
Ccdc38-201ENSMUST00000092215 SynmQ70IV5 1561 aa15.54■□□□□ 0.08
Ccdc38-201ENSMUST00000092215 Grin2aP35436 1464 aa15.54■□□□□ 0.08
Ccdc38-201ENSMUST00000092215 Carmil1Q6EDY6 1374 aa15.53■□□□□ 0.08
Ccdc38-201ENSMUST00000092215 Arhgap27A2AB59 869 aa15.53■□□□□ 0.08
Ccdc38-201ENSMUST00000092215 Pelp1Q9DBD5 1123 aaKnown RBP15.53■□□□□ 0.08
Ccdc38-201ENSMUST00000092215 Setd5Q5XJV7 1441 aa15.49■□□□□ 0.07
Ccdc38-201ENSMUST00000092215 Magi3Q9EQJ9 1476 aa15.49■□□□□ 0.07
Ccdc38-201ENSMUST00000092215 Pla2r1Q62028 1487 aa15.48■□□□□ 0.07
Ccdc38-201ENSMUST00000092215 Map3k1P53349 1493 aa15.47■□□□□ 0.07
Ccdc38-201ENSMUST00000092215 Cc2d2bA0A286YDU8 1405 aa15.46■□□□□ 0.07
Ccdc38-201ENSMUST00000092215 Plekhg3Q4VAC9 1341 aa15.46■□□□□ 0.07
Retrieved 100 of 22,080 RNA–protein pairs in 23.6 ms