RNA–Protein interactions for RNA: ENSMUST00000080860.12

Ccdc28a-202, Transcript of Coiled-coil domain-containing 28A, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc28a, Length 1,190 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-202ENSMUST00000080860 Gm35339A0A140LHH9 1649 aa28.56■■■□□ 2.16
Ccdc28a-202ENSMUST00000080860 NischQ80TM9 1593 aa27.94■■■□□ 2.06
Ccdc28a-202ENSMUST00000080860 Abcc8B2RUS7 1588 aa27.14■■□□□ 1.93
Ccdc28a-202ENSMUST00000080860 Abcc9P70170 1546 aa27.13■■□□□ 1.93
Ccdc28a-202ENSMUST00000080860 ScribQ80U72 1612 aa26.22■■□□□ 1.79
Ccdc28a-202ENSMUST00000080860 NacadQ5SWP3 1504 aa25.32■■□□□ 1.64
Ccdc28a-202ENSMUST00000080860 Kdm5dQ62240 1548 aa25.26■■□□□ 1.63
Ccdc28a-202ENSMUST00000080860 Dcaf1Q80TR8 1506 aa25.07■■□□□ 1.6
Ccdc28a-202ENSMUST00000080860 Sycp2Q9CUU3 1500 aa24.86■■□□□ 1.57
Ccdc28a-202ENSMUST00000080860 BicraF8VPZ9 1578 aa24.55■■□□□ 1.52
Ccdc28a-202ENSMUST00000080860 Rb1cc1Q9ESK9 1588 aa24.31■■□□□ 1.48
Ccdc28a-202ENSMUST00000080860 Ccdc180J3QNE4 1664 aa24.18■■□□□ 1.46
Ccdc28a-202ENSMUST00000080860 Crybg2B7ZCC2 1516 aa24.12■■□□□ 1.45
Ccdc28a-202ENSMUST00000080860 Baz1aO88379 1555 aa24.03■■□□□ 1.44
Ccdc28a-202ENSMUST00000080860 Pds5bQ4VA53 1446 aaKnown RBP23.79■■□□□ 1.4
Ccdc28a-202ENSMUST00000080860 Dnajc5bQ9CQ94 199 aa23.78■■□□□ 1.4
Ccdc28a-202ENSMUST00000080860 Thoc2B1AZI6 1594 aaKnown RBP23.72■■□□□ 1.39
Ccdc28a-202ENSMUST00000080860 Rhox8Q6VSS7 320 aa23.61■■□□□ 1.37
Ccdc28a-202ENSMUST00000080860 Atad2bE9Q166 1460 aaKnown RBP23.6■■□□□ 1.37
Ccdc28a-202ENSMUST00000080860 Zcchc6Q5BLK4 1491 aaKnown RBP23.47■■□□□ 1.35
Ccdc28a-202ENSMUST00000080860 Smarca2Q6DIC0 1577 aa23.37■■□□□ 1.33
Ccdc28a-202ENSMUST00000080860 Smarca4Q3TKT4 1613 aaKnown RBP23.34■■□□□ 1.33
Ccdc28a-202ENSMUST00000080860 Cecr2E9Q2Z1 1453 aa23.22■■□□□ 1.31
Ccdc28a-202ENSMUST00000080860 Iqgap2Q3UQ44 1575 aa23.21■■□□□ 1.31
Ccdc28a-202ENSMUST00000080860 Cc2d2aQ8CFW7 1633 aa23.19■■□□□ 1.3
Ccdc28a-202ENSMUST00000080860 Ercc6F8VPZ5 1481 aa23.17■■□□□ 1.3
Ccdc28a-202ENSMUST00000080860 Fam135aQ6NS59 1506 aa23.17■■□□□ 1.3
Ccdc28a-202ENSMUST00000080860 Wdr62Q3U3T8 1523 aa23.08■■□□□ 1.29
Ccdc28a-202ENSMUST00000080860 Baz1bQ9Z277 1479 aa23.05■■□□□ 1.28
Ccdc28a-202ENSMUST00000080860 Frmpd1A2AKB4 1549 aa23.03■■□□□ 1.28
Ccdc28a-202ENSMUST00000080860 Phldb1Q6PDH0 1371 aaKnown RBP22.88■■□□□ 1.25
Ccdc28a-202ENSMUST00000080860 Rtl1Q7M732 1744 aa22.77■■□□□ 1.23
Ccdc28a-202ENSMUST00000080860 CftrP26361 1476 aa22.74■■□□□ 1.23
Ccdc28a-202ENSMUST00000080860 Unc13aQ4KUS2 1712 aa22.69■■□□□ 1.22
Ccdc28a-202ENSMUST00000080860 Cttnbp2B9EJA2 1648 aa22.69■■□□□ 1.22
Ccdc28a-202ENSMUST00000080860 Synj1Q8CHC4 1574 aa22.61■■□□□ 1.21
Ccdc28a-202ENSMUST00000080860 Brd4Q9ESU6 1400 aaKnown RBP22.59■■□□□ 1.21
Ccdc28a-202ENSMUST00000080860 Mrc2Q64449 1479 aa22.51■■□□□ 1.19
Ccdc28a-202ENSMUST00000080860 Ubl4bQ9CQ84 188 aa22.46■■□□□ 1.19
Ccdc28a-202ENSMUST00000080860 Ccdc136Q3TVA9 1136 aa22.17■■□□□ 1.14
Ccdc28a-202ENSMUST00000080860 Lamc3Q9R0B6 1581 aa22.12■■□□□ 1.13
Ccdc28a-202ENSMUST00000080860 Rsf1E9PWW9 1441 aaKnown RBP22.11■■□□□ 1.13
Ccdc28a-202ENSMUST00000080860 Cux2P70298 1426 aa22.06■■□□□ 1.12
Ccdc28a-202ENSMUST00000080860 Kif15Q6P9L6 1387 aa22.01■■□□□ 1.11
Ccdc28a-202ENSMUST00000080860 Lrriq1Q0P5X1 1673 aa22■■□□□ 1.11
Ccdc28a-202ENSMUST00000080860 Trim41Q5NCC3 630 aa21.98■■□□□ 1.11
Ccdc28a-202ENSMUST00000080860 Kif21aQ9QXL2 1672 aa21.94■■□□□ 1.1
Ccdc28a-202ENSMUST00000080860 Esf1Q3V1V3 845 aaKnown RBP21.91■■□□□ 1.1
Ccdc28a-202ENSMUST00000080860 TnnQ80Z71 1560 aa21.9■■□□□ 1.1
Ccdc28a-202ENSMUST00000080860 Top2bQ64511 1612 aa21.85■■□□□ 1.09
Ccdc28a-202ENSMUST00000080860 Golga3P55937 1487 aa21.77■■□□□ 1.08
Ccdc28a-202ENSMUST00000080860 Eif4g3Q80XI3 1579 aaKnown RBP21.74■■□□□ 1.07
Ccdc28a-202ENSMUST00000080860 Cep164Q5DU05 1446 aa21.72■■□□□ 1.07
Ccdc28a-202ENSMUST00000080860 Camsap1A2AHC3 1581 aa21.66■■□□□ 1.06
Ccdc28a-202ENSMUST00000080860 Npm1Q61937 292 aaKnown RBP21.66■■□□□ 1.06
Ccdc28a-202ENSMUST00000080860 Urb2E9Q7L1 1524 aaKnown RBP21.64■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 Ccdc18Q640L5 1455 aa21.64■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 Dhx29Q6PGC1 1365 aaKnown RBP21.61■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 Dnajc5P60904 198 aa21.61■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 LrpprcQ6PB66 1392 aaKnown RBP21.61■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 Shroom2A2ALU4 1481 aa21.59■■□□□ 1.05
Ccdc28a-202ENSMUST00000080860 Fmn1Q05860 1466 aa21.57■■□□□ 1.04
Ccdc28a-202ENSMUST00000080860 Plb1Q3TTY0 1478 aa21.56■■□□□ 1.04
Ccdc28a-202ENSMUST00000080860 Crocc2F6XLV1 1638 aa21.51■■□□□ 1.03
Ccdc28a-202ENSMUST00000080860 PogzQ8BZH4 1409 aaKnown RBP21.51■■□□□ 1.03
Ccdc28a-202ENSMUST00000080860 Ift140E9PY46 1464 aa21.43■■□□□ 1.02
Ccdc28a-202ENSMUST00000080860 Rusc2Q80U22 1514 aa21.38■■□□□ 1.01
Ccdc28a-202ENSMUST00000080860 Duox2A2AQ99 1517 aa21.36■■□□□ 1.01
Ccdc28a-202ENSMUST00000080860 Grin2bQ01097 1482 aa21.36■■□□□ 1.01
Ccdc28a-202ENSMUST00000080860 Cngb1E1AZ71 1325 aa21.29■■□□□ 1
Ccdc28a-202ENSMUST00000080860 Disp1Q3TDN0 1521 aa21.29■■□□□ 1
Ccdc28a-202ENSMUST00000080860 Il27Q8K3I6 234 aa21.28■■□□□ 1
Ccdc28a-202ENSMUST00000080860 Efcab5A0JP43 1406 aa21.26■□□□□ 0.99
Ccdc28a-202ENSMUST00000080860 Nup160Q9Z0W3 1402 aaKnown RBP21.25■□□□□ 0.99
Ccdc28a-202ENSMUST00000080860 Col17a1Q07563 1470 aa21.23■□□□□ 0.99
Ccdc28a-202ENSMUST00000080860 Samd9lQ69Z37 1561 aa21.23■□□□□ 0.99
Ccdc28a-202ENSMUST00000080860 Pbrm1Q8BSQ9 1634 aaKnown RBP21.22■□□□□ 0.99
Ccdc28a-202ENSMUST00000080860 Setd1bQ8CFT2 1985 aa21.19■□□□□ 0.98
Ccdc28a-202ENSMUST00000080860 Gpatch8A2A6A1 1505 aa21.19■□□□□ 0.98
Ccdc28a-202ENSMUST00000080860 Top2aQ01320 1528 aaKnown RBP21.17■□□□□ 0.98
Ccdc28a-202ENSMUST00000080860 Cc2d2bA0A286YDU8 1405 aa21.16■□□□□ 0.98
Ccdc28a-202ENSMUST00000080860 NrkQ9R0G8 1455 aa21.15■□□□□ 0.98
Ccdc28a-202ENSMUST00000080860 Ccdc88bQ4QRL3 1481 aa21.13■□□□□ 0.97
Ccdc28a-202ENSMUST00000080860 Pabpn1Q8CCS6 302 aaKnown RBP21.09■□□□□ 0.97
Ccdc28a-202ENSMUST00000080860 Zcchc11B2RX14 1644 aaKnown RBP21.08■□□□□ 0.97
Ccdc28a-202ENSMUST00000080860 Magi3Q9EQJ9 1476 aa21.07■□□□□ 0.96
Ccdc28a-202ENSMUST00000080860 Grin2aP35436 1464 aa21.02■□□□□ 0.96
Ccdc28a-202ENSMUST00000080860 AqrQ8CFQ3 1481 aaKnown RBP21■□□□□ 0.95
Ccdc28a-202ENSMUST00000080860 Shroom4Q1W617 1475 aa20.98■□□□□ 0.95
Ccdc28a-202ENSMUST00000080860 Rad54l2Q99NG0 1466 aa20.96■□□□□ 0.95
Ccdc28a-202ENSMUST00000080860 PtprkP35822 1457 aa20.94■□□□□ 0.94
Ccdc28a-202ENSMUST00000080860 Pla2r1Q62028 1487 aa20.91■□□□□ 0.94
Ccdc28a-202ENSMUST00000080860 SynmQ70IV5 1561 aa20.9■□□□□ 0.94
Ccdc28a-202ENSMUST00000080860 Fgd6Q69ZL1 1399 aa20.88■□□□□ 0.93
Ccdc28a-202ENSMUST00000080860 Chic1Q8CBW7 227 aa20.84■□□□□ 0.93
Ccdc28a-202ENSMUST00000080860 Pelp1Q9DBD5 1123 aaKnown RBP20.75■□□□□ 0.91
Ccdc28a-202ENSMUST00000080860 Cep170Q6A065 1588 aa20.72■□□□□ 0.91
Ccdc28a-202ENSMUST00000080860 Mroh2bQ7M6Y6 1581 aa20.72■□□□□ 0.91
Ccdc28a-202ENSMUST00000080860 Gapvd1Q6PAR5 1458 aa20.71■□□□□ 0.91
Ccdc28a-202ENSMUST00000080860 Adgrl3Q80TS3 1537 aa20.71■□□□□ 0.91
Retrieved 100 of 22,080 RNA–protein pairs in 37.9 ms