RNA–Protein interactions for RNA: ENSMUST00000030586.14

Ccdc28b-201, Transcript of Coiled-coil domain-containing protein 28B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc28b, Length 879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28b-201ENSMUST00000030586 Gm35339A0A140LHH9 1649 aa25.85■■□□□ 1.73
Ccdc28b-201ENSMUST00000030586 NischQ80TM9 1593 aa25.6■■□□□ 1.69
Ccdc28b-201ENSMUST00000030586 Abcc9P70170 1546 aa24.79■■□□□ 1.56
Ccdc28b-201ENSMUST00000030586 Abcc8B2RUS7 1588 aa24.79■■□□□ 1.56
Ccdc28b-201ENSMUST00000030586 ScribQ80U72 1612 aa23.86■■□□□ 1.41
Ccdc28b-201ENSMUST00000030586 NacadQ5SWP3 1504 aa23.08■■□□□ 1.28
Ccdc28b-201ENSMUST00000030586 Kdm5dQ62240 1548 aa23.08■■□□□ 1.28
Ccdc28b-201ENSMUST00000030586 Dcaf1Q80TR8 1506 aa22.76■■□□□ 1.23
Ccdc28b-201ENSMUST00000030586 Sycp2Q9CUU3 1500 aa22.66■■□□□ 1.22
Ccdc28b-201ENSMUST00000030586 BicraF8VPZ9 1578 aa22.36■■□□□ 1.17
Ccdc28b-201ENSMUST00000030586 Rb1cc1Q9ESK9 1588 aa22.28■■□□□ 1.16
Ccdc28b-201ENSMUST00000030586 Rhox8Q6VSS7 320 aa22.17■■□□□ 1.14
Ccdc28b-201ENSMUST00000030586 Baz1aO88379 1555 aa21.99■■□□□ 1.11
Ccdc28b-201ENSMUST00000030586 Crybg2B7ZCC2 1516 aa21.9■■□□□ 1.1
Ccdc28b-201ENSMUST00000030586 Ccdc180J3QNE4 1664 aa21.82■■□□□ 1.08
Ccdc28b-201ENSMUST00000030586 Dnajc5bQ9CQ94 199 aa21.81■■□□□ 1.08
Ccdc28b-201ENSMUST00000030586 Zcchc6Q5BLK4 1491 aaKnown RBP21.68■■□□□ 1.06
Ccdc28b-201ENSMUST00000030586 Pds5bQ4VA53 1446 aaKnown RBP21.65■■□□□ 1.06
Ccdc28b-201ENSMUST00000030586 Atad2bE9Q166 1460 aaKnown RBP21.49■■□□□ 1.03
Ccdc28b-201ENSMUST00000030586 Thoc2B1AZI6 1594 aaKnown RBP21.47■■□□□ 1.03
Ccdc28b-201ENSMUST00000030586 Cecr2E9Q2Z1 1453 aa21.39■■□□□ 1.02
Ccdc28b-201ENSMUST00000030586 Smarca2Q6DIC0 1577 aa21.36■■□□□ 1.01
Ccdc28b-201ENSMUST00000030586 Smarca4Q3TKT4 1613 aaKnown RBP21.29■■□□□ 1
Ccdc28b-201ENSMUST00000030586 Iqgap2Q3UQ44 1575 aa21.18■□□□□ 0.98
Ccdc28b-201ENSMUST00000030586 Ercc6F8VPZ5 1481 aa21.14■□□□□ 0.98
Ccdc28b-201ENSMUST00000030586 Cc2d2aQ8CFW7 1633 aa21.11■□□□□ 0.97
Ccdc28b-201ENSMUST00000030586 Frmpd1A2AKB4 1549 aa21.03■□□□□ 0.96
Ccdc28b-201ENSMUST00000030586 Wdr62Q3U3T8 1523 aa21.01■□□□□ 0.95
Ccdc28b-201ENSMUST00000030586 Fam135aQ6NS59 1506 aa20.99■□□□□ 0.95
Ccdc28b-201ENSMUST00000030586 Phldb1Q6PDH0 1371 aaKnown RBP20.87■□□□□ 0.93
Ccdc28b-201ENSMUST00000030586 CftrP26361 1476 aa20.86■□□□□ 0.93
Ccdc28b-201ENSMUST00000030586 Ccdc136Q3TVA9 1136 aa20.81■□□□□ 0.92
Ccdc28b-201ENSMUST00000030586 Synj1Q8CHC4 1574 aa20.8■□□□□ 0.92
Ccdc28b-201ENSMUST00000030586 Rtl1Q7M732 1744 aa20.79■□□□□ 0.92
Ccdc28b-201ENSMUST00000030586 Brd4Q9ESU6 1400 aaKnown RBP20.73■□□□□ 0.91
Ccdc28b-201ENSMUST00000030586 Cttnbp2B9EJA2 1648 aa20.7■□□□□ 0.9
Ccdc28b-201ENSMUST00000030586 Ubl4bQ9CQ84 188 aa20.69■□□□□ 0.9
Ccdc28b-201ENSMUST00000030586 Baz1bQ9Z277 1479 aa20.63■□□□□ 0.89
Ccdc28b-201ENSMUST00000030586 Unc13aQ4KUS2 1712 aa20.6■□□□□ 0.89
Ccdc28b-201ENSMUST00000030586 Mrc2Q64449 1479 aa20.5■□□□□ 0.87
Ccdc28b-201ENSMUST00000030586 Esf1Q3V1V3 845 aaKnown RBP20.41■□□□□ 0.86
Ccdc28b-201ENSMUST00000030586 Trim41Q5NCC3 630 aa20.4■□□□□ 0.86
Ccdc28b-201ENSMUST00000030586 Kif15Q6P9L6 1387 aa20.28■□□□□ 0.84
Ccdc28b-201ENSMUST00000030586 Rsf1E9PWW9 1441 aaKnown RBP20.27■□□□□ 0.84
Ccdc28b-201ENSMUST00000030586 Cux2P70298 1426 aa20.26■□□□□ 0.83
Ccdc28b-201ENSMUST00000030586 Lamc3Q9R0B6 1581 aa20.18■□□□□ 0.82
Ccdc28b-201ENSMUST00000030586 Golga3P55937 1487 aa20.08■□□□□ 0.81
Ccdc28b-201ENSMUST00000030586 Kif21aQ9QXL2 1672 aa20.01■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Lrriq1Q0P5X1 1673 aa20■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Dnajc5P60904 198 aa20■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Npm1Q61937 292 aaKnown RBP20■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Top2bQ64511 1612 aa20■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 TnnQ80Z71 1560 aa19.97■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Cngb1E1AZ71 1325 aa19.97■□□□□ 0.79
Ccdc28b-201ENSMUST00000030586 Cep164Q5DU05 1446 aa19.92■□□□□ 0.78
Ccdc28b-201ENSMUST00000030586 Il27Q8K3I6 234 aa19.87■□□□□ 0.77
Ccdc28b-201ENSMUST00000030586 Dhx29Q6PGC1 1365 aaKnown RBP19.84■□□□□ 0.77
Ccdc28b-201ENSMUST00000030586 Ccdc18Q640L5 1455 aa19.82■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 Camsap1A2AHC3 1581 aa19.82■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 LrpprcQ6PB66 1392 aaKnown RBP19.82■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 Fmn1Q05860 1466 aa19.8■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 Urb2E9Q7L1 1524 aaKnown RBP19.8■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 Plb1Q3TTY0 1478 aa19.79■□□□□ 0.76
Ccdc28b-201ENSMUST00000030586 Eif4g3Q80XI3 1579 aaKnown RBP19.7■□□□□ 0.74
Ccdc28b-201ENSMUST00000030586 PogzQ8BZH4 1409 aaKnown RBP19.7■□□□□ 0.74
Ccdc28b-201ENSMUST00000030586 Crocc2F6XLV1 1638 aa19.65■□□□□ 0.74
Ccdc28b-201ENSMUST00000030586 Ccdc88bQ4QRL3 1481 aa19.63■□□□□ 0.73
Ccdc28b-201ENSMUST00000030586 Duox2A2AQ99 1517 aa19.6■□□□□ 0.73
Ccdc28b-201ENSMUST00000030586 Grin2bQ01097 1482 aa19.59■□□□□ 0.73
Ccdc28b-201ENSMUST00000030586 Ift140E9PY46 1464 aa19.54■□□□□ 0.72
Ccdc28b-201ENSMUST00000030586 Chic1Q8CBW7 227 aa19.53■□□□□ 0.72
Ccdc28b-201ENSMUST00000030586 Disp1Q3TDN0 1521 aa19.5■□□□□ 0.71
Ccdc28b-201ENSMUST00000030586 Shroom2A2ALU4 1481 aa19.48■□□□□ 0.71
Ccdc28b-201ENSMUST00000030586 Efcab5A0JP43 1406 aa19.45■□□□□ 0.7
Ccdc28b-201ENSMUST00000030586 Top2aQ01320 1528 aaKnown RBP19.45■□□□□ 0.7
Ccdc28b-201ENSMUST00000030586 Rusc2Q80U22 1514 aa19.45■□□□□ 0.7
Ccdc28b-201ENSMUST00000030586 Samd9lQ69Z37 1561 aa19.44■□□□□ 0.7
Ccdc28b-201ENSMUST00000030586 PtprkP35822 1457 aa19.38■□□□□ 0.69
Ccdc28b-201ENSMUST00000030586 Nup160Q9Z0W3 1402 aaKnown RBP19.38■□□□□ 0.69
Ccdc28b-201ENSMUST00000030586 NrkQ9R0G8 1455 aa19.37■□□□□ 0.69
Ccdc28b-201ENSMUST00000030586 Rad54l2Q99NG0 1466 aa19.35■□□□□ 0.69
Ccdc28b-201ENSMUST00000030586 Pabpn1Q8CCS6 302 aaKnown RBP19.3■□□□□ 0.68
Ccdc28b-201ENSMUST00000030586 Cc2d2bA0A286YDU8 1405 aa19.3■□□□□ 0.68
Ccdc28b-201ENSMUST00000030586 Magi3Q9EQJ9 1476 aa19.29■□□□□ 0.68
Ccdc28b-201ENSMUST00000030586 Shroom4Q1W617 1475 aa19.28■□□□□ 0.68
Ccdc28b-201ENSMUST00000030586 Grin2aP35436 1464 aa19.25■□□□□ 0.67
Ccdc28b-201ENSMUST00000030586 Col17a1Q07563 1470 aa19.24■□□□□ 0.67
Ccdc28b-201ENSMUST00000030586 Pbrm1Q8BSQ9 1634 aaKnown RBP19.21■□□□□ 0.67
Ccdc28b-201ENSMUST00000030586 Setd1bQ8CFT2 1985 aa19.19■□□□□ 0.66
Ccdc28b-201ENSMUST00000030586 Pelp1Q9DBD5 1123 aaKnown RBP19.19■□□□□ 0.66
Ccdc28b-201ENSMUST00000030586 Pla2r1Q62028 1487 aa19.18■□□□□ 0.66
Ccdc28b-201ENSMUST00000030586 AqrQ8CFQ3 1481 aaKnown RBP19.17■□□□□ 0.66
Ccdc28b-201ENSMUST00000030586 SynmQ70IV5 1561 aa19.14■□□□□ 0.65
Ccdc28b-201ENSMUST00000030586 Fgd6Q69ZL1 1399 aa19.1■□□□□ 0.65
Ccdc28b-201ENSMUST00000030586 Gpatch8A2A6A1 1505 aa19.1■□□□□ 0.65
Ccdc28b-201ENSMUST00000030586 HrcG5E8J6 738 aa19.05■□□□□ 0.64
Ccdc28b-201ENSMUST00000030586 Mroh2bQ7M6Y6 1581 aa19.05■□□□□ 0.64
Ccdc28b-201ENSMUST00000030586 Zeb1Q64318 1117 aa19.03■□□□□ 0.64
Ccdc28b-201ENSMUST00000030586 Npm2Q80W85 207 aa18.99■□□□□ 0.63
Ccdc28b-201ENSMUST00000030586 Rapgef2Q8CHG7 1496 aa18.98■□□□□ 0.63
Retrieved 100 of 22,080 RNA–protein pairs in 25.6 ms