RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 CRYL1Q9Y2S2 319 aa17.12■□□□□ 0.33
PNKP-230ENST00000638016 PCDHGA6Q9Y5G7 932 aa17.12■□□□□ 0.33
PNKP-230ENST00000638016 KCNMB2Q9Y691 235 aa17.12■□□□□ 0.33
PNKP-230ENST00000638016 CCDC88CQ9P219 2028 aa17.12■□□□□ 0.33
PNKP-230ENST00000638016 ISM1B1AKI9 464 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 DNAJB5O75953 348 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 SLCO2B1O94956 709 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 CYP2A7P20853 494 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 RPS3P23396 243 aaKnown RBP eCLIP17.11■□□□□ 0.33
PNKP-230ENST00000638016 PPARGP37231 505 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 MC1RQ01726 317 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 PLOD1Q02809 727 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 TYSND1Q2T9J0 566 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 KIAA0930Q6ICG6 404 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 ZNF517Q6ZMY9 492 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 ASZ1Q8WWH4 475 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 ZNF669Q96BR6 464 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 CLIP3Q96DZ5 547 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 SERPINB12Q96P63 405 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 FAM117AQ9C073 453 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 SPRTNQ9H040 489 aaPredicted RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 FANCEQ9HB96 536 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 OR6C2Q9NZP2 312 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 POLG2Q9UHN1 485 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 KCND3Q9UK17 655 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 SNX12Q9UMY4 172 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 PCDHB3Q9Y5E6 796 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 PCSK5Q92824 1860 aa17.11■□□□□ 0.33
PNKP-230ENST00000638016 TNRC6AQ8NDV7 1962 aaKnown RBP17.11■□□□□ 0.33
PNKP-230ENST00000638016 A0A0J9YY10 115 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 C21orf140B9A014 251 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 H3BMH7 237 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 J3QKU1 62 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 MEN1O00255 615 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 ZNF749O43361 778 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 PHF2O75151 1096 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 FOXL2P58012 376 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 CHAF1BQ13112 559 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 TMED2Q15363 201 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 KYNUQ16719 465 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 CPZQ66K79 652 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 CNSTQ6PJW8 725 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 FAM198BQ6UWH4 519 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 CENPUQ71F23 418 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 TMEM151BQ8IW70 566 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 DCUN1D3Q8IWE4 304 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 DSELQ8IZU8 1212 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 OR8K5Q8NH50 307 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 APOBEC4Q8WW27 367 aaKnown RBP17.1■□□□□ 0.33
PNKP-230ENST00000638016 ABHD17AQ96GS6 310 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 TSSK1BQ9BXA7 367 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 TRIM55Q9BYV6 548 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 ADNPQ9H2P0 1102 aa17.1■□□□□ 0.33
PNKP-230ENST00000638016 ACTR5Q9H9F9 607 aaPredicted RBP17.1■□□□□ 0.33
PNKP-230ENST00000638016 F8W8V4 182 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 AP3B1O00203 1094 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 BANF1O75531 89 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 CAPN1P07384 714 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 MAGP20916 626 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 PSMB5P28074 263 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 PTPN4P29074 926 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 RAB28P51157 221 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 ITGA1P56199 1179 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 DHX34Q14147 1143 aaKnown RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 ANKRD20A4Q4UJ75 823 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 CRTC2Q53ET0 693 aaPredicted RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 UNC5DQ6UXZ4 953 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 OTOAQ7RTW8 1153 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 HOOK3Q86VS8 718 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 DENND6AQ8IWF6 608 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 SYTL1Q8IYJ3 562 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 ENDOVQ8N8Q3 282 aaKnown RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 NAT8LQ8N9F0 302 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 ACTRT1Q8TDG2 376 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 SKA2Q8WVK7 121 aaPredicted RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 PANX3Q96QZ0 392 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 SLC30A3Q99726 388 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 DDX47Q9H0S4 455 aaKnown RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 POLHQ9Y253 713 aa17.09■□□□□ 0.33
PNKP-230ENST00000638016 HEMK1Q9Y5R4 338 aaPredicted RBP17.09■□□□□ 0.33
PNKP-230ENST00000638016 NBASA2RRP1 2371 aa17.08■□□□□ 0.33
PNKP-230ENST00000638016 ZCWPW2A0A1B0GU75 182 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 E7EQ34 232 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 KIF5CO60282 957 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 NRP2O60462 931 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 MSL3P1P0C860 447 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 CBSLP0DN79 551 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 CD9P21926 228 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 CBSP35520 551 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 MAGEA3P43357 314 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 CTBP1Q13363 440 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 ACSBG2Q5FVE4 666 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 C1orf189Q5VU69 101 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 ZNF385CQ66K41 422 aaPredicted RBP17.08■□□□□ 0.32
PNKP-230ENST00000638016 ZNF470Q6ECI4 717 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 MRNIPQ6NTE8 343 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 NEPROQ6NW34 567 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 LRRC6Q86X45 466 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 CILP2Q8IUL8 1156 aa17.08■□□□□ 0.32
PNKP-230ENST00000638016 MCUQ8NE86 351 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms