RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 THEGLP0DJG4 465 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 HNRNPH2P55795 449 aaKnown RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 YPEL5P62699 121 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 TRAF3Q13114 568 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 NAE1Q13564 534 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 CDKL4Q5MAI5 379 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 PRAMEF9Q5VWM5 478 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 KANK2Q63ZY3 851 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 CAPRIN2Q6IMN6 1127 aaKnown RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 GPRIN3Q6ZVF9 776 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 CLYBLQ8N0X4 340 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 OR4F6Q8NGB9 312 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 ZNF480Q8WV37 535 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 ATP6V1E2Q96A05 226 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 MED8Q96G25 268 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 TBC1D29Q9UFV1 150 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 DMTF1Q9Y222 760 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 TDRKHQ9Y2W6 561 aaKnown RBP19.56■□□□□ 0.72
CLN3-250ENST00000636839 ANGPTL3Q9Y5C1 460 aa19.56■□□□□ 0.72
CLN3-250ENST00000636839 E9PBE3 544 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 SDHDO14521 159 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 KLHL41O60662 606 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 UBOX5O94941 541 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 FGF4P08620 206 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 SLC35G4P0C7Q5 338 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 RABIFP47224 123 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 PIK3CGP48736 1102 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 HNMTP50135 292 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 EIF2B5Q13144 721 aaKnown RBP19.55■□□□□ 0.72
CLN3-250ENST00000636839 FASTKQ14296 549 aaKnown RBP19.55■□□□□ 0.72
CLN3-250ENST00000636839 HSPA12BQ96MM6 686 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 ZNF382Q96SR6 550 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 MIR1-1HGQ9H1L0 117 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 SLC32A1Q9H598 525 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 VTI1BQ9UEU0 232 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 GIMAP2Q9UG22 337 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 ACSL5Q9ULC5 683 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 G3BP2Q9UN86 482 aaKnown RBP19.55■□□□□ 0.72
CLN3-250ENST00000636839 LAMA1P25391 3075 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 BDP1A6H8Y1 2624 aa19.55■□□□□ 0.72
CLN3-250ENST00000636839 FCHO1O14526 889 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 KELP23276 732 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 CCR3P51677 355 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 FZD2Q14332 565 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 LSM12Q3MHD2 195 aaKnown RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 TMEM198Q66K66 360 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 SLC30A9Q6PML9 568 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 ARMCX6Q7L4S7 300 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 SNX31Q8N9S9 440 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 C12orf66Q96MD2 445 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 OR4K3Q96R72 315 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 SIKE1Q9BRV8 207 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 APOBEC2Q9Y235 224 aaKnown RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 RNF11Q9Y3C5 154 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 EML5Q05BV3 1969 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 PDZK1P1A8MUH7 402 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 MYO1CO00159 1063 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 SNUPNO95149 360 aaKnown RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 CELA2BP08218 269 aaPredicted RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 LINC00032P0C843 101 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 EPB42P16452 691 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 FNTBP49356 437 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 CCNG1P51959 295 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 TSTA3Q13630 321 aaPredicted RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 UBAP2LQ14157 1087 aaKnown RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 OR9A1PQ8NGU1 263 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 TWIST2Q8WVJ9 160 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 MARK4Q96L34 752 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 HBEGFQ99075 208 aa19.54■□□□□ 0.72
CLN3-250ENST00000636839 IMP3Q9NV31 184 aaKnown RBP19.54■□□□□ 0.72
CLN3-250ENST00000636839 TRBV23OR9-2A0A075B6M9 112 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 IFRD1O00458 451 aaPredicted RBP19.53■□□□□ 0.72
CLN3-250ENST00000636839 PIP5K1BO14986 540 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 MAP3K13O43283 966 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 CRCPO75575 148 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 CAPN1P07384 714 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 CD1EP15812 388 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 IDSP22304 550 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 CD27P26842 260 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 SUSD1Q6UWL2 747 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 UNC5DQ6UXZ4 953 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 MILR1Q7Z6M3 343 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 CLNKQ7Z7G1 428 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 NRROSQ86YC3 692 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 SFTPA2Q8IWL1 248 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 TCAIMQ8N3R3 496 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 FBXO15Q8NCQ5 510 aaPredicted RBP19.53■□□□□ 0.72
CLN3-250ENST00000636839 PLCD4Q9BRC7 762 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 TCF7L2Q9NQB0 619 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 ZFP69BQ9UJL9 534 aa19.53■□□□□ 0.72
CLN3-250ENST00000636839 SPTY2D1-AS1A0A0U1RR47 76 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 SLCO1B7G3V0H7 640 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 TNFRSF10CO14798 259 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 FFAR3O14843 346 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 GPR42O15529 346 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 DCTN3O75935 186 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 HTR6P50406 440 aa19.52■□□□□ 0.72
CLN3-250ENST00000636839 SRSF5Q13243 272 aaKnown RBP19.52■□□□□ 0.72
CLN3-250ENST00000636839 USP39Q53GS9 565 aaKnown RBP19.52■□□□□ 0.72
CLN3-250ENST00000636839 SPDYAQ5MJ70 313 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms