RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 RNASE12Q5GAN4 147 aaKnown RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 TNFAIP8L2Q6P589 184 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 SLC39A5Q6ZMH5 540 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 C12orf76Q8N812 135 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 RASGEF1AQ8N9B8 481 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 OR4C6Q8NH72 309 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 YIPF4Q9BSR8 244 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 NUSAP1Q9BXS6 441 aaKnown RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 ARHGAP39Q9C0H5 1083 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 C12orf65Q9H3J6 166 aaKnown RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 C11orf16Q9NQ32 467 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 CRTAC1Q9NQ79 661 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 GDAP2Q9NXN4 497 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 DNAJB4Q9UDY4 337 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 SERTAD3Q9UJW9 196 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 PSMD9O00233 223 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 NME6O75414 186 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 CXCR1P25024 350 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 CBX5P45973 191 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 DUSP3P51452 185 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 PPP3R1P63098 170 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 PRRT3Q5FWE3 981 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 KCTD8Q6ZWB6 473 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 OR2T34Q8NGX1 318 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 OR2T3Q8NH03 318 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 ZNF384Q8TF68 577 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 PYCR2Q96C36 320 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 C1QTNF1Q9BXJ1 281 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 C19orf25Q9UFG5 118 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-219ENST00000620786 RAPGEFL1Q9UHV5 662 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 PCDHB3Q9Y5E6 796 aa11.16□□□□□ -0.62
CLIP1-219ENST00000620786 H0YGN5 161 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 HAS3O00219 553 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 CDC7O00311 574 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 NPHS1O60500 1241 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 LCA5LO95447 670 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 SEC24AO95486 1093 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 RENP00797 406 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 RIPK1Q13546 671 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 TLR1Q15399 786 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 FSTL5Q8N475 847 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 NIPA2Q8N8Q9 360 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 MUC13Q9H3R2 512 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 RNPEPL1Q9HAU8 725 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 MKKSQ9NPJ1 570 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 C15orf41Q9Y2V0 281 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 DHRS7Q9Y394 339 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 CCDC182A6NF36 153 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 ZNF208O43345 1280 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 TYRP1P17643 537 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 TGFBR2P37173 567 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 CRISP3P54108 245 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 JAG1P78504 1218 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 PRKD1Q15139 912 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 ELOCQ15369 112 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 ZNF311Q5JNZ3 666 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 OR2L5Q8NG80 312 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 OR4K17Q8NGC6 315 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 OR5M3Q8NGP4 307 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 GRHL3Q8TE85 626 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 C1GALT1C1Q96EU7 318 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 CDK15Q96Q40 435 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 IFT27Q9BW83 186 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 FAM192AQ9GZU8 254 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 IL1RAPQ9NPH3 570 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 PNPLA3Q9NST1 481 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 ARL8BQ9NVJ2 186 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 CNTN6Q9UQ52 1028 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 SNED1Q8TER0 1413 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 A0A1W2PRB8 838 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 IFNA6P05013 189 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 GTPBP3Q969Y2 492 aaKnown RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 RBM4BQ9BQ04 359 aaKnown RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 RBM4Q9BWF3 364 aaKnown RBP11.15□□□□□ -0.62
CLIP1-219ENST00000620786 TESMINQ9Y4I5 508 aa11.15□□□□□ -0.62
CLIP1-219ENST00000620786 hCG_2039718K7EN88 272 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 PAPSS2O95340 614 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-219ENST00000620786 C9P02748 559 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 HEXBP07686 556 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 FOSL2P15408 326 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 SCNN1AP37088 669 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 IRF9Q00978 393 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 UBAP2Q5T6F2 1119 aaKnown RBP11.15□□□□□ -0.63
CLIP1-219ENST00000620786 KBTBD2Q8IY47 623 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 KBTBD7Q8WVZ9 684 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 CMTM7Q96FZ5 175 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 COMMD4Q9H0A8 199 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF222Q9UK12 451 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 KNDC1Q76NI1 1749 aa11.15□□□□□ -0.63
CLIP1-219ENST00000620786 XRN1Q8IZH2 1706 aaKnown RBP11.14□□□□□ -0.63
CLIP1-219ENST00000620786 PRORSD1PA6NEY8 169 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 PITPNM1O00562 1244 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 BCKDKO14874 412 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 HAT1O14929 419 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 KHNYNO15037 678 aaKnown RBP11.14□□□□□ -0.63
CLIP1-219ENST00000620786 PCDHGA12O60330 932 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 IQCF3P0C7M6 154 aa11.14□□□□□ -0.63
CLIP1-219ENST00000620786 CSNK2A2P19784 350 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms