RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 ADGRF3Q8IZF5 1079 aa13.69□□□□□ -0.22
LIG1-218ENST00000599322 LPGAT1Q92604 370 aa13.69□□□□□ -0.22
LIG1-218ENST00000599322 CLIP3Q96DZ5 547 aa13.69□□□□□ -0.22
LIG1-218ENST00000599322 LATS2Q9NRM7 1088 aa13.69□□□□□ -0.22
LIG1-218ENST00000599322 FAM114A2Q9NRY5 505 aa13.69□□□□□ -0.22
LIG1-218ENST00000599322 A0A0J9YY10 115 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 LOC101059948A0A1B0GTJ6 334 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 ZNF839A8K0R7 811 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 C21orf140B9A014 251 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 TMEM150CB9EJG8 249 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 E7EQ34 232 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 S1PR4O95977 384 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 NTRK1P04629 796 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 UGT2B7P16662 529 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 ZNF28P17035 718 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 CD9P21926 228 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 ATP5DP30049 168 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 CCR10P46092 362 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 SRSF6Q13247 344 aaKnown RBP13.68□□□□□ -0.22
LIG1-218ENST00000599322 MORF4L2Q15014 288 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 KYNUQ16719 465 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 BBS9Q3SYG4 887 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 SPANXN3Q5MJ09 141 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 RNASEH2BQ5TBB1 312 aaKnown RBP13.68□□□□□ -0.22
LIG1-218ENST00000599322 PWWP2BQ6NUJ5 590 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 UGT3A1Q6NUS8 523 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 C16orf46Q6P387 395 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 BORAQ6PGQ7 559 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 FBXO38Q6PIJ6 1188 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 UNC5BQ8IZJ1 945 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 ZBTB2Q8N680 514 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 BBOF1Q8ND07 529 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 STARD8Q92502 1023 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 MR1Q95460 341 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 MED8Q96G25 268 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 TRAPPC9Q96Q05 1148 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 PITPNM3Q9BZ71 974 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 FAM117AQ9C073 453 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 PPANQ9NQ55 473 aaKnown RBP13.68□□□□□ -0.22
LIG1-218ENST00000599322 LHX9Q9NQ69 397 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 CROTQ9UKG9 612 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 PYCARDQ9ULZ3 195 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 PLAGL1Q9UM63 463 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 AP1M2Q9Y6Q5 423 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 FAM169AQ9Y6X4 670 aa13.68□□□□□ -0.22
LIG1-218ENST00000599322 PIKFYVEQ9Y2I7 2098 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 PABPN1LA6NDY0 278 aaKnown RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 NIPSNAP2O75323 286 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 FKBP9O95302 570 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 CATP04040 527 aaKnown RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 MSL3P1P0C860 447 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ST6GAL1P15907 406 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 AGXTP21549 392 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ARNTP27540 789 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ITGA1P56199 1179 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ARL4CP56559 192 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 DNASE1L3Q13609 305 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 LY6DQ14210 128 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 NAA25Q14CX7 972 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 SF1Q15637 639 aaKnown RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 SLC5A12Q1EHB4 618 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 CNSTQ6PJW8 725 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 MAATS1Q7Z4T9 603 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 KCNMB4Q86W47 210 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 CREG2Q8IUH2 290 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 PALM2Q8IXS6 379 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 C19orf47Q8N9M1 422 aaKnown RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 LKAAEAR1Q8TD35 194 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 DENND1AQ8TEH3 1009 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 EXTL1Q92935 676 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ZNF501Q96CX3 271 aaPredicted RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 SIGLEC10Q96LC7 697 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 EBNA1BP2Q99848 306 aaKnown RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 C17orf62Q9BQA9 187 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 SLC12A9Q9BXP2 914 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 GPR87Q9BY21 358 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 KLHL25Q9H0H3 589 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 ACTR5Q9H9F9 607 aaPredicted RBP13.67□□□□□ -0.22
LIG1-218ENST00000599322 KLHL42Q9P2K6 505 aa13.67□□□□□ -0.22
LIG1-218ENST00000599322 SDK2Q58EX2 2172 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 RASGRF2O14827 1237 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 VPS26AO75436 327 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 CD63P08962 238 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 PRKAR1AP10644 381 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 ENO3P13929 434 aaPredicted RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 PKLRP30613 574 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 HSD17B2P37059 387 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 MAGEA3P43357 314 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 CYP4F2P78329 520 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 CTBP1Q13363 440 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 TBR1Q16650 682 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 KCTD19Q17RG1 926 aaPredicted RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 CRTC2Q53ET0 693 aaPredicted RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 HSP90AA5PQ58FG0 334 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 ZC3H12BQ5HYM0 836 aaKnown RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 CTSL3PQ5NE16 218 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 LRRC8EQ6NSJ5 796 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 CENPUQ71F23 418 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 VRK3Q8IV63 474 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 OR2L8Q8NGY9 312 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms