RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PTPN4P29074 926 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 BDKRB1P46663 353 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 EIF3BP55884 814 aaKnown RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 CDK16Q00536 496 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 KYNUQ16719 465 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 PTCHD3Q3KNS1 767 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 DNAJC21Q5F1R6 531 aaKnown RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 FAM69BQ5VUD6 431 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 CPZQ66K79 652 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 KIAA0930Q6ICG6 404 aaPredicted RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 SYVN1Q86TM6 617 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 DCUN1D3Q8IWE4 304 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 SYTL1Q8IYJ3 562 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 AGGF1Q8N302 714 aaeCLIP12.6□□□□□ -0.39
LIG1-212ENST00000596549 SLC35F6Q8N357 371 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 C9orf43Q8TAL5 461 aaPredicted RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 ADAMTS17Q8TE56 1095 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 COG1Q8WTW3 980 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 ASZ1Q8WWH4 475 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 LPGAT1Q92604 370 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 BIRC8Q96P09 236 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 TSSK1BQ9BXA7 367 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 TRIM55Q9BYV6 548 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 ACTR5Q9H9F9 607 aaPredicted RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 GRPEL1Q9HAV7 217 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 SYTL2Q9HCH5 934 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 ZNF71Q9NQZ8 489 aaPredicted RBP12.6□□□□□ -0.39
LIG1-212ENST00000596549 HOMER3Q9NSC5 361 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 OR6C2Q9NZP2 312 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 TP53TG5Q9Y2B4 290 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 MED13Q9UHV7 2174 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 E7EQ34 232 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 F8W8V4 182 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 NRDCO43847 1150 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 NIPSNAP2O75323 286 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 DNAJB5O75953 348 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 RECKO95980 971 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 APOA4P06727 396 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 CYP2A7P20853 494 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 MAGP20916 626 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 PPARGP37231 505 aaPredicted RBP12.59□□□□□ -0.39
LIG1-212ENST00000596549 RAB28P51157 221 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 PMS2P54278 862 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 ITGA1P56199 1179 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 GBX1Q14549 363 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 UGT8Q16880 541 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 SLC5A12Q1EHB4 618 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 CCSMST1Q4G0I0 132 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 PTRHD1Q6GMV3 140 aaKnown RBP12.59□□□□□ -0.39
LIG1-212ENST00000596549 CCDC137Q6PK04 289 aaKnown RBP12.59□□□□□ -0.39
LIG1-212ENST00000596549 UNC5DQ6UXZ4 953 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 TAX1BP1Q86VP1 789 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 SPNS2Q8IVW8 549 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 ENDOVQ8N8Q3 282 aaKnown RBP12.59□□□□□ -0.39
LIG1-212ENST00000596549 CFAP61Q8NHU2 1237 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 CLIP3Q96DZ5 547 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 SERPINB12Q96P63 405 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 PANX3Q96QZ0 392 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 OSBPL9Q96SU4 736 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 GPR87Q9BY21 358 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 EPN3Q9H201 632 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 MAN2B2Q9Y2E5 1009 aa12.59□□□□□ -0.39
LIG1-212ENST00000596549 ISM1B1AKI9 464 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 PGRMC1O00264 195 aaKnown RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 RASGRF2O14827 1237 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 ZNF749O43361 778 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 PHF2O75151 1096 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 NDUFS3O75489 264 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 PDGFAP04085 211 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 OGNP20774 298 aaKnown RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 CD9P21926 228 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 COILP38432 576 aaPredicted RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 MAGEA3P43357 314 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 CHAF1BQ13112 559 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 KIR2DS3Q14952 304 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 TMED2Q15363 201 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 COLEC12Q5KU26 742 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 ATG14Q6ZNE5 492 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 CENPUQ71F23 418 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 LRRC6Q86X45 466 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 APLFQ8IW19 511 aaPredicted RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 C2orf73Q8N5S3 287 aaPredicted RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 OTUD6BQ8N6M0 293 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 DENND1AQ8TEH3 1009 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 MAGOHBQ96A72 148 aaKnown RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 ZNF669Q96BR6 464 aaPredicted RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 TCTN2Q96GX1 697 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 PBKQ96KB5 322 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 CHRNA10Q9GZZ6 450 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 GALPQ9UBC7 116 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 TSR3Q9UJK0 312 aaKnown RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 FARSAQ9Y285 508 aaKnown RBP12.58□□□□□ -0.4
LIG1-212ENST00000596549 KLHL20Q9Y2M5 609 aa12.58□□□□□ -0.4
LIG1-212ENST00000596549 ZCWPW2A0A1B0GU75 182 aa12.57□□□□□ -0.4
LIG1-212ENST00000596549 GOLGA8MH3BSY2 632 aa12.57□□□□□ -0.4
LIG1-212ENST00000596549 ZNF185O15231 689 aa12.57□□□□□ -0.4
LIG1-212ENST00000596549 PRICKLE3O43900 615 aaPredicted RBP12.57□□□□□ -0.4
LIG1-212ENST00000596549 RFPL1O75677 317 aa12.57□□□□□ -0.4
LIG1-212ENST00000596549 C1orf105O95561 183 aa12.57□□□□□ -0.4
LIG1-212ENST00000596549 KLK3P07288 261 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms