RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 COG4Q9H9E3 785 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 SMYD2Q9NRG4 433 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 INTS10Q9NVR2 710 aaKnown RBP12.97□□□□□ -0.33
CCDC40-205ENST00000571028 NINJ2Q9NZG7 142 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 SRPK3Q9UPE1 567 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 VPS9D1Q9Y2B5 631 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 PSAT1Q9Y617 370 aa12.97□□□□□ -0.33
CCDC40-205ENST00000571028 TEP1Q99973 2627 aaKnown RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 TTLL8A6PVC2 850 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 CXorf49A8MYA2 514 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 KCNJ13O60928 360 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 AHSGP02765 367 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 GSTA2P09210 222 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 F3P13726 295 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 SLC2A4P14672 509 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 BRAFP15056 766 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 GNLYP22749 145 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 RPS3P23396 243 aaKnown RBP eCLIP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 GABRB3P28472 473 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 HALP42357 657 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 UQCRFS1P47985 274 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 LIMK2P53671 638 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 KRT33BQ14525 404 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 EFTUD2Q15029 972 aaKnown RBP eCLIP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 TMED2Q15363 201 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 ERCC6LQ2NKX8 1250 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 ZNF549Q6P9A3 640 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 SLC9B2Q86UD5 537 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 PPM1NQ8N819 430 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 OR4D9Q8NGE8 314 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 SLC37A2Q8TED4 501 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 SKA2Q8WVK7 121 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 CDKL2Q92772 493 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 LINC00615Q96LM1 132 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 C12orf66Q96MD2 445 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 PANX3Q96QZ0 392 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 PHACTR1Q9C0D0 580 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 RRAGDQ9NQL2 400 aaPredicted RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 IMP3Q9NV31 184 aaKnown RBP12.96□□□□□ -0.33
CCDC40-205ENST00000571028 MOCS1Q9NZB8 636 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 GALPQ9UBC7 116 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 PCDHB3Q9Y5E6 796 aa12.96□□□□□ -0.33
CCDC40-205ENST00000571028 C17orf113A0A1B0GUU1 675 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 H3BMM5 538 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 VIPP01282 170 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 ESR1P03372 595 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 APOA4P06727 396 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 MYBL2P10244 700 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 NR1D1P20393 614 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 MPSTP25325 297 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 CD1CP29017 333 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 OAS2P29728 719 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 STX2P32856 288 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 PHBP35232 272 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 MAPK9P45984 424 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 GPR3P46089 330 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 LEPRP48357 1165 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 CD151P48509 253 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 DMPKQ09013 629 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 CBLBQ13191 982 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 NAA30Q147X3 362 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 UAP1Q16222 522 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 RPE65Q16518 533 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 KBTBD12Q3ZCT8 623 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 RBM20Q5T481 1227 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 METRNLQ641Q3 311 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 ANKS6Q68DC2 871 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 CAPRIN2Q6IMN6 1127 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 ASB18Q6ZVZ8 466 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 OTOAQ7RTW8 1153 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 SFRP1Q8N474 314 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 SIDT2Q8NBJ9 832 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 GALNT11Q8NCW6 608 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 PHC3Q8NDX5 983 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 CFAP61Q8NHU2 1237 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 ELMO2Q96JJ3 720 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 INSM2Q96T92 566 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 DPYSL5Q9BPU6 564 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 STN1Q9H668 368 aaKnown RBP12.95□□□□□ -0.34
CCDC40-205ENST00000571028 TXNDC16Q9P2K2 825 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 PILRAQ9UKJ1 303 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 ACSL5Q9ULC5 683 aa12.95□□□□□ -0.34
CCDC40-205ENST00000571028 SPTBN1Q01082 2364 aaKnown RBP12.94□□□□□ -0.34
CCDC40-205ENST00000571028 KIR2DS5A0A0G2JLQ3 304 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 A0A0G2JNG1 304 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 A6NCN8 305 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 B4E171 279 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 KIR2DS3K7RE56 304 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 IFRD1O00458 451 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-205ENST00000571028 LIN7AO14910 233 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-205ENST00000571028 PPM1DO15297 605 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 VPS26AO75436 327 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 FAM155BO75949 473 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 SLC19A1P41440 591 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 TSPAN7P41732 249 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 PGGT1BP53609 377 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 PMS2P54278 862 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 VSNL1P62760 191 aa12.94□□□□□ -0.34
CCDC40-205ENST00000571028 TUBB4BP68371 445 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms