RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 POLG2Q9UHN1 485 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 MAPRE3Q9UPY8 281 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PDE10AQ9Y233 779 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 HEBP2Q9Y5Z4 205 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 KCNE2Q9Y6J6 123 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 BDP1A6H8Y1 2624 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 CHD7Q9P2D1 2997 aa7.77□□□□□ -1.16
VPS39-213ENST00000570062 KIF26AQ9ULI4 1882 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 BBIP1A8MTZ0 92 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SDHDO14521 159 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CLGNO14967 610 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CCNT2O60583 730 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 LILRB5O75023 590 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ULK1O75385 1050 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 GUCA1CO95843 209 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PCCBP05166 539 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 KRT16P08779 473 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 HSD3B1P14060 373 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ACPPP15309 386 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 NQO1P15559 274 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 ZNF8P17098 575 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 HNRNPA2B1P22626 353 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 HSD3B2P26439 372 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 TARSP26639 723 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 NDUFS1P28331 727 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 MAPK1P28482 360 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ARRB2P32121 409 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CA5AP35218 305 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ARL1P40616 181 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 HNF4AP41235 474 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SLC6A12P48065 614 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CLCNKAP51800 687 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 STARD6P59095 220 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 KIAA1024LP59773 190 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 NCALDP61601 193 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 MXRA7P84157 204 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SF3A3Q12874 501 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS39-213ENST00000570062 KLF10Q13118 480 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CYLC2Q14093 348 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 LRP8Q14114 963 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PTK2BQ14289 1009 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 INPP5AQ14642 412 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 NR6A1Q15406 480 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 HIST2H2ACQ16777 129 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 UGT3A2Q3SY77 523 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SLC9B1Q4ZJI4 515 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ATP6AP1LQ52LC2 224 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 COQ5Q5HYK3 327 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PAGE2BQ5JRK9 111 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 METRNLQ641Q3 311 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 NAIF1Q69YI7 327 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 HIST2H2AA3Q6FI13 130 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CAPN13Q6MZZ7 669 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 KIAA1211LQ6NV74 962 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 C16orf89Q6UX73 402 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 LARP4Q71RC2 724 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS39-213ENST00000570062 GOLGA7Q7Z5G4 137 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SFTPA1Q8IWL2 248 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ADHFE1Q8IWW8 467 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 DDIASQ8IXT1 998 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PCYOX1LQ8NBM8 494 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 TP53I13Q8NBR0 393 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 OR9A1PQ8NGU1 263 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CFAP61Q8NHU2 1237 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 MAFAQ8NHW3 353 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 RPLP0P6Q8NHW5 317 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 AGR3Q8TD06 166 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 EZH1Q92800 747 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 MCUR1Q96AQ8 359 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PTCD3Q96EY7 689 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 SCARF2Q96GP6 870 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 SERPINI1Q99574 410 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 RTKNQ9BST9 563 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 HAUS8Q9BT25 410 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 APOOQ9BUR5 198 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SLC25A23Q9BV35 468 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 PITHD1Q9GZP4 211 aaPredicted RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 EHD1Q9H4M9 534 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ACTR8Q9H981 624 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 CD248Q9HCU0 757 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 SPATA7Q9P0W8 599 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 ADGRE2Q9UHX3 823 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 EIF2B4Q9UI10 523 aaKnown RBP7.77□□□□□ -1.17
VPS39-213ENST00000570062 SLC17A4Q9Y2C5 497 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 COQ6Q9Y2Z9 468 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 TMED5Q9Y3A6 229 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 DNAJC15Q9Y5T4 150 aa7.77□□□□□ -1.17
VPS39-213ENST00000570062 TCRBV21S2A2A0A5A6 115 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PRR5-ARHGAP8B1AHC4 643 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 B2RBV5 119 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 E9PBE3 544 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 NPIPB8E9PQR5 432 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PRAMEF26H0Y7S4 382 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MYO1CO00159 1063 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 PSMD12O00232 456 aaPredicted RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 UBFD1O14562 309 aaKnown RBP7.76□□□□□ -1.17
VPS39-213ENST00000570062 TAPBPO15533 448 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 DCXO43602 365 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 KLHL41O60662 606 aa7.76□□□□□ -1.17
VPS39-213ENST00000570062 MTX2O75431 263 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms