RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 LRRC6Q86X45 466 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 PTRH1Q86Y79 214 aaKnown RBP14.35□□□□□ -0.11
CLN3-213ENST00000565047 LMNTD1Q8N9Z9 388 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 COG1Q8WTW3 980 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 MR1Q95460 341 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 NLNQ9BYT8 704 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 ACTR5Q9H9F9 607 aaPredicted RBP14.35□□□□□ -0.11
CLN3-213ENST00000565047 ENAMQ9NRM1 1142 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 SERTAD3Q9UJW9 196 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 PCSK5Q92824 1860 aa14.35□□□□□ -0.11
CLN3-213ENST00000565047 A0A0J9YY10 115 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 CDC14CA4D256 554 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 GOLGA8KD6RF30 607 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 F8W8V4 182 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 GOLGA8TH3BQL2 631 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 ZNF749O43361 778 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 WISP1O95388 367 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 KRT14P02533 472 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 MLNP12872 115 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 CD9P21926 228 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 COILP38432 576 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 ITGA1P56199 1179 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 GPS1Q13098 491 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 CCSMST1Q4G0I0 132 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 FAM69BQ5VUD6 431 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 KIAA0930Q6ICG6 404 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 ATG14Q6ZNE5 492 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 CENPUQ71F23 418 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 FAM20CQ8IXL6 584 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 MCUQ8NE86 351 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 C9orf43Q8TAL5 461 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 THAP4Q8WY91 577 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 MAGOHBQ96A72 148 aaKnown RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 IL17FQ96PD4 163 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 TRIM55Q9BYV6 548 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 SPRTNQ9H040 489 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 KCNF1Q9H3M0 494 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 FANCEQ9HB96 536 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 MLXIPLQ9NP71 852 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 ZNF71Q9NQZ8 489 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 GALPQ9UBC7 116 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 ANAPC5Q9UJX4 755 aa14.34□□□□□ -0.11
CLN3-213ENST00000565047 UBR5O95071 2799 aaPredicted RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 ASH1LQ9NR48 2969 aaKnown RBP14.34□□□□□ -0.11
CLN3-213ENST00000565047 ZCWPW2A0A1B0GU75 182 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 E7EQ34 232 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 KLF7O75840 302 aaPredicted RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 C1orf105O95561 183 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 PDGFAP04085 211 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 APOA4P06727 396 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 KLK3P07288 261 aaPredicted RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 RPS15P62841 145 aaKnown RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 PTCHD3Q3KNS1 767 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 PTRHD1Q6GMV3 140 aaKnown RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 TCTN3Q6NUS6 607 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 DCUN1D3Q8IWE4 304 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 SYTL1Q8IYJ3 562 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 ENDOVQ8N8Q3 282 aaKnown RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 NAT8LQ8N9F0 302 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 OR2L8Q8NGY9 312 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 ACTRT1Q8TDG2 376 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 DENND1AQ8TEH3 1009 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 SEC14L1Q92503 715 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 PANX3Q96QZ0 392 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 TCF12Q99081 682 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 TSSK1BQ9BXA7 367 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 CIDEBQ9UHD4 219 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 GNPTGQ9UJJ9 305 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 TLK1Q9UKI8 766 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 TCFL5Q9UL49 500 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 TP53TG5Q9Y2B4 290 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 MED16Q9Y2X0 877 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 HEMK1Q9Y5R4 338 aaPredicted RBP14.33□□□□□ -0.12
CLN3-213ENST00000565047 NFS1Q9Y697 457 aa14.33□□□□□ -0.12
CLN3-213ENST00000565047 SNRNP200O75643 2136 aaKnown RBP14.32□□□□□ -0.12
CLN3-213ENST00000565047 FAM237BA0A1B0GVD1 139 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 A0A1W2PPV9 198 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 RASGRF2O14827 1237 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 NDUFS3O75489 264 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 DNAJB5O75953 348 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 MATN4O95460 622 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 S1PR4O95977 384 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 NR1D1P20393 614 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CYP2A7P20853 494 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CASRP41180 1078 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 VPS41P49754 854 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CSRP3P50461 194 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 DEFB110Q30KQ9 67 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 ANKRD20A4Q4UJ75 823 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CPZQ66K79 652 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 FCRL6Q6DN72 434 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 MRNIPQ6NTE8 343 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 RHBDD2Q6NTF9 364 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CCDC137Q6PK04 289 aaKnown RBP14.32□□□□□ -0.12
CLN3-213ENST00000565047 CILP2Q8IUL8 1156 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 SLC35F6Q8N357 371 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 HMGCLL1Q8TB92 370 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 CLIP3Q96DZ5 547 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 SIGLEC10Q96LC7 697 aa14.32□□□□□ -0.12
CLN3-213ENST00000565047 ZNF285Q96NJ3 590 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms