RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	MANBA	O00462	879 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TREH	O43280	583 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	ALDH1A1	P00352	501 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSTT2	P0CG29	244 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSTT2B	P0CG30	244 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC2A2	P11168	524 aa	Predicted RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TNNI3	P19429	210 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TACR2	P21452	398 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	CD40LG	P29965	261 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	GGT5	P36269	586 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	CRYBB1	P53674	252 aa	Predicted RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	RAB15	P59190	212 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLDN10	P78369	228 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TXNL4A	P83876	142 aa	Known RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	IRF8	Q02556	426 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	SCN1B	Q07699	218 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC10A7	Q0GE19	358 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TCEA2	Q15560	299 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	KCNA10	Q16322	511 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	PABPC1L	Q4VXU2	614 aa	Known RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	FKBP1C	Q5VVH2	108 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	DESI1	Q6ICB0	168 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	SULT1C3	Q6IMI6	304 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	GPR142	Q7Z601	462 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TBC1D19	Q8N5T2	526 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR7D4	Q8NG98	312 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	ARNTL2	Q8WYA1	636 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TFAP2C	Q92754	450 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMCO6	Q96DC7	493 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	CEP295NL	Q96MC4	621 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF347	Q96SE7	839 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	MND1	Q9BWT6	205 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TRPM5	Q9NZQ8	1165 aa		4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABT1	Q9ULW3	272 aa	Known RBP	4.89	□□□□□ -1.63
SYNE2-223	ENST00000557005	TMX2-CTNND1	H3BSU7	103 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TLR4	O00206	839 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC1A7	O00341	560 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	HAT1	O14929	419 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	INSIG1	O15503	277 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PSIP1	O75475	530 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	UPK1B	O75841	260 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CDRT1	O95170	752 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DNTT	P04053	509 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	JUN	P05412	331 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CLTB	P09497	229 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	MYL9	P24844	172 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DCK	P27707	260 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACVRL1	P37023	503 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GDF5	P43026	501 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GALNT2	Q10471	571 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ABRAXAS2	Q15018	415 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	WSCD2	Q2TBF2	565 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	USP30	Q70CQ3	517 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF534	Q76KX8	674 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC15A3	Q8IY34	581 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RTP4	Q96DX8	246 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	BBS4	Q96RK4	519 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TBX5	Q99593	518 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ADAM2	Q99965	735 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR2B2	Q9GZK3	357 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	AGPAT4	Q9NRZ5	378 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHGC4	Q9Y5F7	938 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GLI3	P10071	1580 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRR23A	A6NEV1	266 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	UPK3BL1	B0FP48	263 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	UPK3BL2	E5RIL1	263 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	COQ9	O75208	318 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GADD45G	O95257	159 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRAMEF1	O95521	474 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	LRG1	P02750	347 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	MT-ND2	P03891	347 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CCNYL3	P0C7X3	344 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	BMP2	P12643	396 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	NOS3	P29474	1203 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	HLCS	P50747	726 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ATN1	P54259	1190 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ST8SIA6	P61647	398 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SH3BP2	P78314	561 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	RPL6	Q02878	288 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	LRP8	Q14114	963 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TAF1C	Q15572	869 aa	Predicted RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SNAPC1	Q16533	368 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	DUOXA1	Q1HG43	343 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	ZNF404	Q494X3	552 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	UBE2U	Q5VVX9	321 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	HACD2	Q6Y1H2	254 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	CHMP1B	Q7LBR1	199 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	NPW	Q8N729	165 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	TBC1D15	Q8TC07	691 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	NETO1	Q8TDF5	533 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC38A2	Q96QD8	506 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SLC30A2	Q9BRI3	323 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	EMILIN2	Q9BXX0	1053 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	THUMPD1	Q9NXG2	353 aa	Known RBP	4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDH10	Q9P2E7	1040 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	GALP	Q9UBC7	116 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHGA3	Q9Y5H0	932 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	PCDHGA10	Q9Y5H3	936 aa		4.88	□□□□□ -1.63
SYNE2-223	ENST00000557005	SHANK3	Q9BYB0	1731 aa		4.88	□□□□□ -1.63

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