RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ISM1B1AKI9 464 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 H3BMM5 538 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZSCAN9O15535 394 aaPredicted RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 NDUFS3O75489 264 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 TMEM63AO94886 807 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 SLCO2B1O94956 709 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 S1PR4O95977 384 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 FGGP02679 453 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 PIM1P11309 404 aaPredicted RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 PVRP15151 417 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 CD9P21926 228 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 RPS3P23396 243 aaKnown RBP eCLIP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 CCR7P32248 378 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 CCNFP41002 786 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 CCL11P51671 97 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 ARSFP54793 590 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 RPS18P62269 152 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 BASP1P80723 227 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 DCDP81605 110 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 SSPNQ14714 243 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZC3H12BQ5HYM0 836 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 RNF187Q5TA31 235 aaPredicted RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 PRAMEF17Q5VTA0 474 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 YOD1Q5VVQ6 348 aaPredicted RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 PTRHD1Q6GMV3 140 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 MRNIPQ6NTE8 343 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 RHBDD2Q6NTF9 364 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZNF534Q76KX8 674 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 DCUN1D3Q8IWE4 304 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 ADAMTS17Q8TE56 1095 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 DLG3Q92796 817 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 RAD51AP1Q96B01 352 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 FER1L6-AS2Q96M78 137 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 FOPNLQ96NB1 174 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 TCF12Q99081 682 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 NDC1Q9BTX1 674 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 MRM3Q9HC36 420 aaKnown RBP10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 MLXIPLQ9NP71 852 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 TXLNGQ9NUQ3 528 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 SLC39A10Q9ULF5 831 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 SEC16AO15027 2179 aa10.5□□□□□ -0.73
VTI1BP3-201ENST00000550220 BOD1L1Q8NFC6 3051 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 MAGEB16A2A368 324 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 PEX12O00623 359 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 DPM1O60762 260 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 CEACAM4O75871 244 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 CAPN1P07384 714 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 ETS1P14921 441 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 PAMP19021 973 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 TPSB2P20231 275 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 AOAHP28039 575 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 PKLRP30613 574 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 SESN2P58004 480 aaPredicted RBP10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 IL10RAQ13651 578 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 NAA25Q14CX7 972 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 TPSAB1Q15661 275 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 LRRC8BQ6P9F7 803 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 FAM198BQ6UWH4 519 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 OTOAQ7RTW8 1153 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 DNAJC22Q8N4W6 341 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 EFCAB3Q8N7B9 438 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 OR2L8Q8NGY9 312 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZUFSPQ96AP4 578 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 PTERQ96BW5 349 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZNF778Q96MU6 729 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 RUFY1Q96T51 708 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 KIFC1Q9BW19 673 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 KLHL25Q9H0H3 589 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 FAM60AQ9NP50 221 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 LZTFL1Q9NQ48 299 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 TREX1Q9NSU2 369 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 IRAK4Q9NWZ3 460 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 SPHK1Q9NYA1 384 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 IL1RAPL1Q9NZN1 696 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 C5AR2Q9P296 337 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 NDOR1Q9UHB4 597 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 VPS9D1Q9Y2B5 631 aa10.49□□□□□ -0.73
VTI1BP3-201ENST00000550220 TTLL8A6PVC2 850 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 TARM1B6A8C7 271 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 RASGRF2O14827 1237 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 CEP104O60308 925 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 SRPX2O60687 465 aaPredicted RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 DNAJB5O75953 348 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZSCAN5DPP0CG00 497 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 TPBGLP0DKB5 382 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 FOLR3P41439 243 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 PTGIRP43119 386 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 GABRA4P48169 554 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 CD97P48960 835 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 CSE1LP55060 971 aaKnown RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 ADARP55265 1226 aaKnown RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 UBAP2LQ14157 1087 aaKnown RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 SIX1Q15475 284 aaPredicted RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 SF1Q15637 639 aaKnown RBP10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 ZIC1Q15915 447 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 IGFBP7Q16270 282 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 PTCHD3Q3KNS1 767 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 TCTE1Q5JU00 501 aa10.48□□□□□ -0.73
VTI1BP3-201ENST00000550220 MLIPQ5VWP3 458 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms