RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 MRM3Q9HC36 420 aaKnown RBP12.56□□□□□ -0.4
PTCH1-212ENST00000546744 NPEPPSL1A6NEC2 478 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AP1G1O43747 822 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 PAPSS2O95340 614 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 FAM163BP0C2L3 166 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 DHRS4L1P0CG22 281 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 BUD31P41223 144 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ARL4DP49703 201 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MTPNP58546 118 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 RAB5BP61020 215 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MBTD1Q05BQ5 628 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 KCNAB2Q13303 367 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 HAGHLQ6PII5 290 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SAMD7Q7Z3H4 446 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 LGI4Q8N135 537 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CIDECQ96AQ7 238 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AP2M1Q96CW1 435 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MTFMTQ96DP5 389 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ZNF285Q96NJ3 590 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SPATA9Q9BWV2 254 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ZNHIT2Q9UHR6 403 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 PCDHGA11Q9Y5H2 935 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 COL1A2P08123 1366 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 A0A1B0GVI7 797 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 TCAF2A6NFQ2 919 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 XPNPEP2O43895 674 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 OR4F21O95013 312 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ITGB1P05556 798 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 T-ENOLP0DO92 83 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MTHFD1P11586 935 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ATP5C1P36542 298 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CXCR3P49682 368 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AP2S1P53680 142 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ADAM8P78325 824 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 GALNT1Q10472 559 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 KANK2Q63ZY3 851 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ATG9BQ674R7 924 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SLC15A4Q8N697 577 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 FCRL2Q96LA5 508 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CEP295NLQ96MC4 621 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SNX18Q96RF0 628 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CORO1BQ9BR76 489 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SLC7A5P2Q9GIP4 190 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MFSD1Q9H3U5 465 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 POLR1DQ9Y2S0 133 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SNX10Q9Y5X0 201 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 TMEM150BA6NC51 233 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 C12orf71A8MTZ7 269 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AMHP03971 560 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 C8GP07360 202 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CTSHP09668 335 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 HTR2AP28223 471 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CLCN4P51793 760 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 EMX2Q04743 252 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 PLD1Q13393 1074 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 LARS2Q15031 903 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 NCEH1Q6PIU2 408 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 GALNT13Q8IUC8 556 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 LIX1Q8N485 282 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SIMC1Q8NDZ2 872 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 GPR21Q99679 349 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 FUNDC2Q9BWH2 189 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AGO3Q9H9G7 860 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 NPAP1Q9NZP6 1156 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 RNF181Q9P0P0 153 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 FAM198AQ9UFP1 575 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ZDHHC2Q9UIJ5 367 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 EXOSC1Q9Y3B2 195 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CKMP06732 381 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 TFPTP0C1Z6 253 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 NMBRP28336 390 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 RPL4P36578 427 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ALDH7A1P49419 539 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 ZNF81P51508 661 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 CSTF1Q05048 431 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SMARCB1Q12824 385 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 UBE2R2Q712K3 238 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 PHACTR4Q8IZ21 702 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 SAMD14Q8IZD0 417 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 BPIFB1Q8TDL5 484 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 MSANTD3Q96H12 275 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 PPP1R16AQ96I34 528 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 FCRL4Q96PJ5 515 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 TCEAL7Q9BRU2 100 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 GPN2Q9H9Y4 310 aaPredicted RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AAASQ9NRG9 546 aa12.55□□□□□ -0.4
PTCH1-212ENST00000546744 AGO1Q9UL18 857 aaKnown RBP12.55□□□□□ -0.4
PTCH1-212ENST00000546744 TLR4O00206 839 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 CREG1O75629 220 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 MEP1AQ16819 746 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 VMACQ2NL98 169 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 PITRM1Q5JRX3 1037 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 GNASQ5JWF2 1037 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 Q6ZNX1 250 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 PRSS48Q7RTY5 328 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 OSMRQ99650 979 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 HERC2P3Q9BVR0 1158 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 SPATC1LQ9H0A9 340 aa12.54□□□□□ -0.4
PTCH1-212ENST00000546744 FAM120CQ9NX05 1096 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms