RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HSD11B2P80365 405 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 SLC7A5Q01650 507 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 GUCY2DQ02846 1103 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 MGAT5Q09328 741 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PRKAA1Q13131 559 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 KCNAB1Q14722 419 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 TGIF1Q15583 401 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 KLHL38Q2WGJ6 581 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 ARMC6Q6NXE6 501 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 FBXO38Q6PIJ6 1188 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 SPESP1Q6UW49 350 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 CEACAM20Q6UY09 585 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 ZBED8Q8IZ13 594 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 CFAP61Q8NHU2 1237 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 GSDMBQ8TAX9 411 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 DENND1AQ8TEH3 1009 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 SNRNP27Q8WVK2 155 aaKnown RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 ASB11Q8WXH4 323 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 INPP5DQ92835 1189 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 NAF1Q96HR8 494 aaKnown RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 TRAPPC9Q96Q05 1148 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 OR6C1Q96RD1 312 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 GPR21Q99679 349 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 CTRCQ99895 268 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 ACTR10Q9NZ32 417 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PLAGL1Q9UM63 463 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 TMEM184BQ9Y519 407 aaPredicted RBP12.56□□□□□ -0.4
VPS28-216ENST00000533806 PSAT1Q9Y617 370 aa12.56□□□□□ -0.4
VPS28-216ENST00000533806 PTPRQQ9UMZ3 2332 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 E5RI56 91 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 STMND1H3BQB6 276 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 GFYI3L273 518 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 EIF3FO00303 357 aaPredicted RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 RASGRF2O14827 1237 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 KLK10O43240 276 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 DLGAP3O95886 979 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 EBLN1P0CF75 366 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 CBSLP0DN79 551 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 ERGP11308 486 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 ST6GAL1P15907 406 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 UGT2B7P16662 529 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 CBSP35520 551 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 CCNFP41002 786 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 SKIV2L2P42285 1042 aaKnown RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 GPX6P59796 221 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 KIR2DS3Q14952 304 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 COL28A1Q2UY09 1125 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS28-216ENST00000533806 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 RBM20Q5T481 1227 aaKnown RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 C8orf74Q6P047 294 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 C19orf48Q6RUI8 117 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 LRRC69Q6ZNQ3 347 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 TIPARPQ7Z3E1 657 aaKnown RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 FBXO15Q8NCQ5 510 aaPredicted RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 OR2L8Q8NGY9 312 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 KIF18AQ8NI77 898 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 GABPB2Q8TAK5 448 aaPredicted RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 HMGCLL1Q8TB92 370 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 PYROXD1Q8WU10 500 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 NKD1Q969G9 470 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 RAD51AP1Q96B01 352 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 ZNF501Q96CX3 271 aaPredicted RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 IL17FQ96PD4 163 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 FCRL4Q96PJ5 515 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 NDNQ99608 321 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 CHRNA10Q9GZZ6 450 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 PRORYQ9H606 182 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 SAYSD1Q9NPB0 183 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 SMYD2Q9NRG4 433 aa12.55□□□□□ -0.4
VPS28-216ENST00000533806 DMGDHQ9UI17 866 aaKnown RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 CORO1CQ9ULV4 474 aaPredicted RBP12.55□□□□□ -0.4
VPS28-216ENST00000533806 ESYT3A0FGR9 886 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 GSAPA4D1B5 854 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 KRT87PA6NCN2 255 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 ARHGEF33A8MVX0 844 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 MYO1CO00159 1063 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 KDM1AO60341 852 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 TSPAN12O95859 305 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 MPC1LP0DKB6 136 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 ENO3P13929 434 aaPredicted RBP12.54□□□□□ -0.4
VPS28-216ENST00000533806 ZNF28P17035 718 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 SSTR1P30872 391 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 ABCG1P45844 678 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 BDKRB1P46663 353 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 GABRA4P48169 554 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 TUBB4BP68371 445 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 FOXM1Q08050 763 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 ZIC1Q15915 447 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 CYP2A13Q16696 494 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 SLC5A12Q1EHB4 618 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 TTLL9Q3SXZ7 439 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 BPHLQ86WA6 291 aaPredicted RBP12.54□□□□□ -0.4
VPS28-216ENST00000533806 SLC26A11Q86WA9 606 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 ZC3HC1Q86WB0 502 aaKnown RBP12.54□□□□□ -0.4
VPS28-216ENST00000533806 LMNTD1Q8N9Z9 388 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 MNS1Q8NEH6 495 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 CRELD1Q96HD1 420 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 CCDC68Q9H2F9 335 aa12.54□□□□□ -0.4
VPS28-216ENST00000533806 PPANQ9NQ55 473 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms