RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GSTA5Q7RTV2 222 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 SYVN1Q86TM6 617 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 CAND1Q86VP6 1230 aaKnown RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 SYTL1Q8IYJ3 562 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 AGGF1Q8N302 714 aaeCLIP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 CPT1BQ92523 772 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 BIRC8Q96P09 236 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 IL17FQ96PD4 163 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 CHRNA10Q9GZZ6 450 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 SPRTNQ9H040 489 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 ACTR5Q9H9F9 607 aaPredicted RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 SYTL2Q9HCH5 934 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 TLK1Q9UKI8 766 aa13.61□□□□□ -0.23
UPF3A-204ENST00000475218 PRRC2CQ9Y520 2896 aaKnown RBP13.61□□□□□ -0.23
UPF3A-204ENST00000475218 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 GOLGA8KD6RF30 607 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 GOLGA8TH3BQL2 631 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 ZNF749O43361 778 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CSRP3P50461 194 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TERF1P54274 439 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CHAF1BQ13112 559 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CCSMST1Q4G0I0 132 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 DNAJC22Q8N4W6 341 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 ENDOVQ8N8Q3 282 aaKnown RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 MAIP1Q8WWC4 291 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 FANCEQ9HB96 536 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 MRM3Q9HC36 420 aaKnown RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 SOX13Q9UN79 622 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 RUVBL2Q9Y230 463 aaKnown RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 MAN2B2Q9Y2E5 1009 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 KLHL20Q9Y2M5 609 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 NFS1Q9Y697 457 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CCDC88CQ9P219 2028 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 A0A0J9YY10 115 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 PRICKLE3O43900 615 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 VAPBO95292 243 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 RAB40ALP0C0E4 278 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CYP2A7P20853 494 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 GCGRP47871 477 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TTPAP49638 278 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 VPS41P49754 854 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 ITGA1P56199 1179 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 GBX1Q14549 363 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 SLC5A12Q1EHB4 618 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TYSND1Q2T9J0 566 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 LACTB2Q53H82 288 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 AARS2Q5JTZ9 985 aaKnown RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 REXO1L1PQ8IX06 675 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 C2orf73Q8N5S3 287 aaPredicted RBP13.6□□□□□ -0.23
UPF3A-204ENST00000475218 ASZ1Q8WWH4 475 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 LPGAT1Q92604 370 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CLIP3Q96DZ5 547 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TCTN2Q96GX1 697 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TTC1Q99614 292 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 NLNQ9BYT8 704 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 CLMPQ9H6B4 373 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 BFARQ9NZS9 450 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 GALPQ9UBC7 116 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 TCFL5Q9UL49 500 aa13.6□□□□□ -0.23
UPF3A-204ENST00000475218 NBASA2RRP1 2371 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 E7EQ34 232 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 RFPL1O75677 317 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 F7P08709 466 aaPredicted RBP13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CBSLP0DN79 551 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 RPS3P23396 243 aaKnown RBP eCLIP13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CBSP35520 551 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CASRP41180 1078 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 PTGIRP43119 386 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 RAB28P51157 221 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 FOXL2P58012 376 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 RPS15P62841 145 aaKnown RBP13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CDK16Q00536 496 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 KCNC4Q03721 635 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 KIR2DS3Q14952 304 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CYP1B1Q16678 543 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 TCTN3Q6NUS6 607 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 UNC5DQ6UXZ4 953 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 DCUN1D3Q8IWE4 304 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 CFAP61Q8NHU2 1237 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 DENND1AQ8TEH3 1009 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 IL1RAPL1Q9NZN1 696 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 SERTAD3Q9UJW9 196 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 HECTD1Q9ULT8 2610 aa13.59□□□□□ -0.23
UPF3A-204ENST00000475218 ISM1B1AKI9 464 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 CNOT3O75175 753 aaKnown RBP13.58□□□□□ -0.23
UPF3A-204ENST00000475218 KLF7O75840 302 aaPredicted RBP13.58□□□□□ -0.23
UPF3A-204ENST00000475218 APOA4P06727 396 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 KLK3P07288 261 aaPredicted RBP13.58□□□□□ -0.23
UPF3A-204ENST00000475218 MAGP20916 626 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 CD9P21926 228 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 GPS1Q13098 491 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 PTRHD1Q6GMV3 140 aaKnown RBP13.58□□□□□ -0.23
UPF3A-204ENST00000475218 CENPUQ71F23 418 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 COG1Q8WTW3 980 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 THAP4Q8WY91 577 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 GBP5Q96PP8 586 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 MLXIPLQ9NP71 852 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 HOMER3Q9NSC5 361 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 ANAPC5Q9UJX4 755 aa13.58□□□□□ -0.23
UPF3A-204ENST00000475218 NIPSNAP2O75323 286 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms