RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RFPL1O75677 317 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 RECKO95980 971 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 APOA4P06727 396 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 MSL3P1P0C860 447 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 ATXN8OSP0DMR3 200 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 PEBP1P30086 187 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 RORAP35398 523 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 NPY2RP49146 381 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 PMS2P54278 862 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 TMED2Q15363 201 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 UGT8Q16880 541 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 PTCHD3Q3KNS1 767 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 DNAJC21Q5F1R6 531 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 SYTL1Q8IYJ3 562 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 ENDOVQ8N8Q3 282 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 MIB2Q96AX9 1013 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 LRFN5Q96NI6 719 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 FAM60AQ9NP50 221 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 HOMER3Q9NSC5 361 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 OR6C2Q9NZP2 312 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 GNPTGQ9UJJ9 305 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 CDYLQ9Y232 598 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 LRRK2Q5S007 2527 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 HEATR5BQ9P2D3 2071 aa15.18■□□□□ 0.02
CCDC88B-205ENST00000472524 ZNF749O43361 778 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 GPC4O75487 556 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 DNAJB5O75953 348 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 PDGFAP04085 211 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 TPSB2P20231 275 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 AOAHP28039 575 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 PKLRP30613 574 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 MLLT10P55197 1068 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 EIF3BP55884 814 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 GPS1Q13098 491 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 CHAF1BQ13112 559 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 TPSAB1Q15661 275 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 ZIC1Q15915 447 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 FAM69BQ5VUD6 431 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 IZUMO3Q5VZ72 239 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 CPZQ66K79 652 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 LRRC8BQ6P9F7 803 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 ZNF517Q6ZMY9 492 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 ASB18Q6ZVZ8 466 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 TAX1BP1Q86VP1 789 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 DCUN1D3Q8IWE4 304 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 FAM20CQ8IXL6 584 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 GPR135Q8IZ08 494 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 C2orf73Q8N5S3 287 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 LMNTD1Q8N9Z9 388 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 FLVCR1-AS1Q8TAF5 88 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 SEC14L1Q92503 715 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 MFSD3Q96ES6 412 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 TCTN2Q96GX1 697 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 IL17FQ96PD4 163 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 MRM3Q9HC36 420 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 IRAK4Q9NWZ3 460 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 TLK1Q9UKI8 766 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 SNX7Q9UNH6 387 aa15.17■□□□□ 0.02
CCDC88B-205ENST00000472524 ARGFXA6NJG6 315 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 GOLGA8KD6RF30 607 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 GOLGA8TH3BQL2 631 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 HCRTR1O43613 425 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 OR2B3O76000 313 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 VAPBO95292 243 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 RPN2P04844 631 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 GP1BBP13224 206 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 RAB28P51157 221 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 CDK16Q00536 496 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 KIR2DS3Q14952 304 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 KYNUQ16719 465 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 SLC5A12Q1EHB4 618 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 TCTN3Q6NUS6 607 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 FAM198BQ6UWH4 519 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 MPP5Q8N3R9 675 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 FAM26EQ8N5C1 309 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 TEX19Q8NA77 164 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 GSDMBQ8TAX9 411 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 SKA2Q8WVK7 121 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 THAP4Q8WY91 577 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 MS4A14Q96JA4 679 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 PANX3Q96QZ0 392 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 KIFC1Q9BW19 673 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 TRIM55Q9BYV6 548 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 P2RY12Q9H244 342 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 TSR3Q9UJK0 312 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 SOX13Q9UN79 622 aa15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 MDC1Q14676 2089 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-205ENST00000472524 NUP210LQ5VU65 1888 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 AVILO75366 819 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 SLCO2B1O94956 709 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 KRT14P02533 472 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 CTSBP07858 339 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 HBQ1P09105 142 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 RAB40ALP0C0E4 278 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 ARNTP27540 789 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 BDKRB1P46663 353 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 CD97P48960 835 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 KCNJ11Q14654 390 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 C1orf189Q5VU69 101 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 ANKRD22Q5VYY1 191 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms