RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SLC32A1Q9H598 525 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CMTM6Q9NX76 183 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 AHSPQ9NZD4 102 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 B4GALT6Q9UBX8 382 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SH3GLB1Q9Y371 365 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SUV39H1O43463 412 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 B4GALT3O60512 393 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RFPL2O75678 378 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SCELO95171 688 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 PABPC1P11940 636 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 GPX3P22352 226 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 HOXD9P28356 352 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 MYLK3Q32MK0 819 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SLC44A4Q53GD3 710 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 INO80DQ53TQ3 878 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CCNYL2Q5T2Q4 361 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 LETMD1Q6P1Q0 360 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RETREG3Q86VR2 466 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CD200R1Q8TD46 325 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ZUFSPQ96AP4 578 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 REPS1Q96D71 796 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 MYOCQ99972 504 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RBM4BQ9BQ04 359 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RBM4Q9BWF3 364 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RAD21L1Q9H4I0 556 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SMURF2Q9HAU4 748 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SDR39U1Q9NRG7 319 aaPredicted RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 ATXN10Q9UBB4 475 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 RAB23Q9ULC3 237 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SAMD4AQ9UPU9 718 aaKnown RBP11.38□□□□□ -0.59
NPHP4-204ENST00000460696 CACNA1HO95180 2353 aa11.38□□□□□ -0.59
NPHP4-204ENST00000460696 SAP18O00422 153 aaKnown RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 PRPS2P11908 318 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CD1EP15812 388 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 RFX3P48380 749 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MGAT3Q09327 533 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 LMAN2Q12907 356 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 RFTN2Q52LD8 501 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CARD16Q5EG05 197 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ARSIQ5FYB1 569 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 PERM1Q5SV97 790 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 TCAIMQ8N3R3 496 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MINDY1Q8N5J2 469 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MAGEE1Q9HCI5 957 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 PAK6Q9NQU5 681 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 IFT80Q9P2H3 777 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MTRRQ9UBK8 725 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MROH6A6NGR9 719 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ATG13O75143 517 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CNOT3O75175 753 aaKnown RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CDH1P12830 882 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 HOXC13P31276 330 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 FOXM1Q08050 763 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MANEALQ5VSG8 457 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 TDHQ8IZJ6 230 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 BEND7Q8N7W2 519 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ZFP28Q8NHY6 868 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 STARD8Q92502 1023 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 RIOK2Q9BVS4 552 aaKnown RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CD244Q9BZW8 370 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 C6orf62Q9GZU0 229 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ATAD3AQ9NVI7 634 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 NUP214P35658 2090 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM189-UBE2V1I3L0A0 370 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 MANBAO00462 879 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 SLC9A3R1O14745 358 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 BCKDKO14874 412 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 SEC24AO95486 1093 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ANGPTL1O95841 491 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 KLKB1P03952 638 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 FGF4P08620 206 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ENO2P09104 434 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 SBK3P0C264 359 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 TRPC1P48995 793 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CYP2A13Q16696 494 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 GPRC6AQ5T6X5 926 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 KANK2Q63ZY3 851 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 DPY19L3Q6ZPD9 716 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 PATL1Q86TB9 770 aaKnown RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 CMTR2Q8IYT2 770 aaKnown RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 ZNF557Q8N988 423 aaPredicted RBP11.37□□□□□ -0.59
NPHP4-204ENST00000460696 OR4A15Q8NGL6 344 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 IL17CQ9P0M4 197 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 SLAMF8Q9P0V8 285 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 APC2O95996 2303 aa11.37□□□□□ -0.59
NPHP4-204ENST00000460696 PITPNM1O00562 1244 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 DENRO43583 198 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 C8GP07360 202 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CHRM1P11229 460 aaPredicted RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 DPP6P42658 865 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 IST1P53990 364 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 INHBCP55103 352 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ALDH6A1Q02252 535 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 NCEH1Q6PIU2 408 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 TMEM126BQ8IUX1 230 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 TBC1D19Q8N5T2 526 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 CSGALNACT1Q8TDX6 532 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 SLC30A3Q99726 388 aa11.36□□□□□ -0.59
NPHP4-204ENST00000460696 ELAC1Q9H777 363 aaKnown RBP11.36□□□□□ -0.59
NPHP4-204ENST00000460696 PLGRKTQ9HBL7 147 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms