RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 COG1Q8WTW3 980 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 GBP5Q96PP8 586 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 TSPY26PQ9H489 355 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ZNF552Q9H707 407 aaPredicted RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 INTS7Q9NVH2 962 aaKnown RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 IL1RAPL1Q9NZN1 696 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 ICKQ9UPZ9 632 aa12.82□□□□□ -0.36
HMGB3-204ENST00000448905 SPENQ96T58 3664 aaKnown RBP12.82□□□□□ -0.36
HMGB3-204ENST00000448905 NBPF19A0A087WUL8 3843 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 AGPSO00116 658 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 ITGA3P26006 1051 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 ACADLP28330 430 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 DBN1Q16643 649 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 P3H1Q32P28 736 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 DNAJC21Q5F1R6 531 aaKnown RBP12.81□□□□□ -0.36
HMGB3-204ENST00000448905 ZC3H12BQ5HYM0 836 aaKnown RBP12.81□□□□□ -0.36
HMGB3-204ENST00000448905 AGAP7PQ5VUJ5 663 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 TRIM73Q86UV7 250 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 DNAJC22Q8N4W6 341 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 DNAAF3Q8N9W5 541 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 FAM71DQ8N9W8 422 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 AGAP4Q96P64 663 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 EURLQ9NYK6 297 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.81□□□□□ -0.36
HMGB3-204ENST00000448905 DHCR7Q9UBM7 475 aaKnown RBP12.81□□□□□ -0.36
HMGB3-204ENST00000448905 CDYLQ9Y232 598 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 LRRK2Q5S007 2527 aa12.81□□□□□ -0.36
HMGB3-204ENST00000448905 ALBP02768 609 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 RNF224P0DH78 156 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 MMP11P24347 488 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 MSNP26038 577 aaKnown RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 PER3P56645 1201 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 ZIC1Q15915 447 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 FAM214AQ32MH5 1076 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 YOD1Q5VVQ6 348 aaPredicted RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 MRPL14Q6P1L8 145 aaKnown RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 PACS1Q6VY07 963 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 Q6ZS92 163 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 OVCH1Q7RTY7 1134 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 MCATQ8IVS2 390 aaKnown RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 PIANPQ8IYJ0 282 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 UBL4BQ8N7F7 174 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 GSDMBQ8TAX9 411 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 DNAJB14Q8TBM8 379 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 ASZ1Q8WWH4 475 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 MRFAP1L1Q96HT8 127 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 NRTNQ99748 197 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 FAM118BQ9BPY3 351 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 TRIM5Q9C035 493 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 SPHK1Q9NYA1 384 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 ERRFI1Q9UJM3 462 aaPredicted RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 CDC23Q9UJX2 597 aa12.8□□□□□ -0.36
HMGB3-204ENST00000448905 EPN1Q9Y6I3 576 aaPredicted RBP12.8□□□□□ -0.36
HMGB3-204ENST00000448905 TEX15Q9BXT5 2789 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 SLC5A10A0PJK1 596 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 MROH6A6NGR9 719 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 H3BMH7 237 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 LDLRP01130 860 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 STIP1P31948 543 aaKnown RBP12.79□□□□□ -0.36
HMGB3-204ENST00000448905 GABRA4P48169 554 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 RAB28P51157 221 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 SLC9A5Q14940 896 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 SF1Q15637 639 aaKnown RBP12.79□□□□□ -0.36
HMGB3-204ENST00000448905 DEFB110Q30KQ9 67 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 TCTE1Q5JU00 501 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 PRAMEF13Q5VWM6 474 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 KCTD11Q693B1 232 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 TTLL10Q6ZVT0 673 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 PPP1R32Q7Z5V6 425 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 KLHDC8BQ8IXV7 354 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 SLC34A3Q8N130 599 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 RAB42Q8N4Z0 105 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 TC2NQ8N9U0 490 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 RNF214Q8ND24 703 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 UBE2Q2Q8WVN8 375 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 FKBP10Q96AY3 582 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 WDR54Q9H977 334 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 MRM3Q9HC36 420 aaKnown RBP12.79□□□□□ -0.36
HMGB3-204ENST00000448905 ANAPC5Q9UJX4 755 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 NXT1Q9UKK6 140 aaKnown RBP12.79□□□□□ -0.36
HMGB3-204ENST00000448905 SLC39A10Q9ULF5 831 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 TFR2Q9UP52 801 aa12.79□□□□□ -0.36
HMGB3-204ENST00000448905 ICE1Q9Y2F5 2266 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 A0A1B0GX78 115 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 HEATR9A2RTY3 570 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 ERI2A8K979 691 aaKnown RBP12.78□□□□□ -0.36
HMGB3-204ENST00000448905 BHMG1C9JSJ3 638 aaPredicted RBP12.78□□□□□ -0.36
HMGB3-204ENST00000448905 SRPX2O60687 465 aaPredicted RBP12.78□□□□□ -0.36
HMGB3-204ENST00000448905 METTL18O95568 372 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 S1PR4O95977 384 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 APOA4P06727 396 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 PRSS56P0CW18 603 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 CD9P21926 228 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 PSMA3P25788 255 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 HSPA14Q0VDF9 509 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 CDH17Q12864 832 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 GRM7Q14831 915 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 NLRP9Q7RTR0 991 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 TXLNBQ8N3L3 684 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 ST6GALNAC3Q8NDV1 305 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms