RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 PLAGL1Q9UM63 463 aa12.05□□□□□ -0.48
USP40-205ENST00000430158 ENTPD2Q9Y5L3 495 aa12.05□□□□□ -0.48
USP40-205ENST00000430158 ADAMTS20P59510 1910 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 MED19A0JLT2 244 aaPredicted RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 BTN3A1O00481 513 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SLC16A5O15375 505 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 CTIFO43310 598 aaKnown RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 DUX1O43812 170 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 TUBBP07437 444 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 THRAP10827 490 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SAT1P21673 171 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 PEBP1P30086 187 aaKnown RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 CCNFP41002 786 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 RGS4P49798 205 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 GFERP55789 205 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 RAB10P61026 200 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SHC2P98077 582 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 BIRC2Q13490 618 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SPIDRQ14159 915 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 CYP2A13Q16696 494 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 PHKG1Q16816 387 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 PPP1R3AQ16821 1122 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 MROH9Q5TGP6 573 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 LRRC8EQ6NSJ5 796 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SBSNQ6UWP8 590 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 ERMP1Q7Z2K6 904 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 LRRC56Q8IYG6 542 aaPredicted RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 LMNTD1Q8N9Z9 388 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 HMGCLL1Q8TB92 370 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 GPR78Q96P69 363 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 IL17FQ96PD4 163 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 PKP4Q99569 1192 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 SPHK1Q9NYA1 384 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 TXNDC16Q9P2K2 825 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 CIDEBQ9UHD4 219 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 TSR3Q9UJK0 312 aaKnown RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 KLK13Q9UKR3 277 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 CLCA2Q9UQC9 943 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 PDE10AQ9Y233 779 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 FRYQ5TBA9 3013 aa12.04□□□□□ -0.48
USP40-205ENST00000430158 MDC1Q14676 2089 aaKnown RBP12.04□□□□□ -0.48
USP40-205ENST00000430158 EXOC1LA0A1B0GW35 172 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 A0A1W2PPV9 198 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 FAM149AA5PLN7 773 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 OR6C74A6NCV1 312 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 POC1B-GALNT4F8VUJ3 575 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 CDC7O00311 574 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 RASGRF2O14827 1237 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 CAPN5O15484 640 aaPredicted RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 ZW10O43264 779 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 KIF1CO43896 1103 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 CSO75390 466 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 RPN2P04844 631 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 NUDT17P0C025 328 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 CD1DP15813 335 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 STMN1P16949 149 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 CRABP2P29373 138 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 SHMT2P34897 504 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 MSH2P43246 934 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 LSSP48449 732 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 KCNC1P48547 511 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 SERPINB9P50453 376 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 RAB28P51157 221 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 KPNA2P52292 529 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 FOXC1Q12948 553 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 TARDBPQ13148 414 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP40-205ENST00000430158 KRT33BQ14525 404 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 C16orf72Q14CZ0 275 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 RASA2Q15283 850 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 TIFABQ6ZNK6 161 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 AMIGO1Q86WK6 493 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 TDRPQ86YL5 185 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 CENPLQ8N0S6 344 aaPredicted RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 GALNT15Q8N3T1 639 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 NKAPQ8N5F7 415 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 OR9A1PQ8NGU1 263 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 OR2L8Q8NGY9 312 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 NCSTNQ92542 709 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 RAD51AP1Q96B01 352 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 TSPAN17Q96FV3 270 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 PRR11Q96HE9 360 aaPredicted RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 PPM1MQ96MI6 270 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 FOPNLQ96NB1 174 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 OR2A14Q96R47 310 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 DERL2Q9GZP9 239 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 SRMSQ9H3Y6 488 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 SYTL2Q9HCH5 934 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 GPAMQ9HCL2 828 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 SNX15Q9NRS6 342 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 IGSF5Q9NSI5 407 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 HRASLS2Q9NWW9 162 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 OR6C2Q9NZP2 312 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 POMT2Q9UKY4 750 aa12.03□□□□□ -0.48
USP40-205ENST00000430158 NOVA2Q9UNW9 492 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 TDRKHQ9Y2W6 561 aaKnown RBP12.03□□□□□ -0.48
USP40-205ENST00000430158 URB1O60287 2271 aaKnown RBP12.02□□□□□ -0.49
USP40-205ENST00000430158 ANKRD11Q6UB99 2663 aaPredicted RBP12.02□□□□□ -0.49
USP40-205ENST00000430158 PMS2P1A4D2B8 440 aa12.02□□□□□ -0.49
USP40-205ENST00000430158 TRIM49D1C9J1S8 452 aa12.02□□□□□ -0.49
USP40-205ENST00000430158 RFPL1O75677 317 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms