RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 OTUB1Q96FW1 271 aaPredicted RBP2.52□□□□□ -2.01
MCF2-204ENST00000414978 ZNF560Q96MR9 790 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 PLEKHG4BQ96PX9 1271 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 SNX18Q96RF0 628 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 NUDCD1Q96RS6 583 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 RUFY1Q96T51 708 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 ERP44Q9BS26 406 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 TM2D2Q9BX73 214 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 NPFFR1Q9GZQ6 430 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 SLCO5A1Q9H2Y9 848 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 SEBOXQ9HB31 216 aaPredicted RBP2.52□□□□□ -2.01
MCF2-204ENST00000414978 FAM212BQ9NTI7 297 aaPredicted RBP2.52□□□□□ -2.01
MCF2-204ENST00000414978 CTNNA3Q9UI47 895 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 CEPT1Q9Y6K0 416 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 MAU2Q9Y6X3 613 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 CACNA1AO00555 2505 aa2.52□□□□□ -2.01
MCF2-204ENST00000414978 MYH7P12883 1935 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 TCRBV21S2A2A0A5A6 115 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 FAM181BA6NEQ2 426 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 MCIDASD6RGH6 385 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 DNALI1O14645 258 aaPredicted RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 CASTP20810 708 aaKnown RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 COMTP21964 271 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 JAK1P23458 1154 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HOXA13P31271 388 aaPredicted RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 TXKP42681 527 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 CXCR3P49682 368 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 PTENP60484 403 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 YWHAZP63104 245 aaKnown RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 TFF2Q03403 129 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 FZD5Q13467 585 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 GPM6BQ13491 265 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LAMB3Q13751 1172 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HSP90AA5PQ58FG0 334 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ZNF618Q5T7W0 954 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ETFRF1Q6IPR1 90 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 RGS9BPQ6ZS82 235 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 SLC29A4Q7RTT9 530 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 PIGWQ7Z7B1 504 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 AADATQ8N5Z0 425 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.51□□□□□ -2.01
MCF2-204ENST00000414978 PNLDC1Q8NA58 520 aaKnown RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 C11orf65Q8NCR3 313 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 URGCPQ8TCY9 931 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LIPHQ8WWY8 451 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 OVCA2Q8WZ82 227 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ITFG2Q969R8 447 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LENG9Q96B70 501 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HDAC11Q96DB2 347 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 GATA5Q9BWX5 397 aaPredicted RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 MEGF9Q9H1U4 602 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 SYTL2Q9HCH5 934 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ST6GALNAC2Q9UJ37 374 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ITGA11Q9UKX5 1188 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HPCAL4Q9UM19 191 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ADAMTS20P59510 1910 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 CEP290O15078 2479 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 KIAA1549LQ6ZVL6 1849 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 CYP3A7-CYP3A51PA0A087WV96 503 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 CPED1A4D0V7 1026 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LRRD1A4D1F6 860 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 FAM90A10PA6NDY2 464 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ERICH4A6NGS2 130 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 H0YIZ8 118 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 RRHO14718 337 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 WDR46O15213 610 aaKnown RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 TTI1O43156 1089 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 XRCC3O43542 346 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 STX6O43752 255 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LANCL1O43813 399 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 TFP02787 698 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 RLN1P04808 185 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 IRF1P10914 325 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 EIF2S2P20042 333 aaKnown RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 CYP3A7P24462 503 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 GUCY1B3Q02153 619 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 MECOMQ03112 1051 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 SLC18A2Q05940 514 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ACSM1Q08AH1 577 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 PTPAQ15257 358 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 SGCBQ16585 318 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HIST2H2ACQ16777 129 aaPredicted RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 PNLIPRP3Q17RR3 467 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ANKRD20A4Q4UJ75 823 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ANKRD20A8PQ5CZ79 823 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ANKRD20A2Q5SQ80 823 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ANKRD20A1Q5TYW2 823 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 ANKRD20A3Q5VUR7 823 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 PLEKHM3Q6ZWE6 761 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 FAM109AQ8N4B1 249 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 LMNTD1Q8N9Z9 388 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 HM13Q8TCT9 377 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 FAR1Q8WVX9 515 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 DVL3Q92997 716 aaPredicted RBP2.51□□□□□ -2.01
MCF2-204ENST00000414978 IGSF8Q969P0 613 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 TMEM186Q96B77 213 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 TXN2Q99757 166 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 CMKLR1Q99788 373 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 SH2D3AQ9BRG2 576 aa2.51□□□□□ -2.01
MCF2-204ENST00000414978 KLC2Q9H0B6 622 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms