RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 GPS2Q13227 327 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 DNASE1L3Q13609 305 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 FRG1Q14331 258 aaKnown RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 LONRF1Q17RB8 773 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 ANKRD20A4Q4UJ75 823 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PRAMEF17Q5VTA0 474 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 STEAP4Q687X5 459 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 TMEM220Q6QAJ8 160 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 CYS1Q717R9 158 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 DET1Q7L5Y6 550 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 AMZ2Q86W34 360 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PPP1R3BQ86XI6 285 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 IQCKQ8N0W5 287 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 LILRA3Q8N6C8 439 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 GOLGA6L1Q8N7Z2 621 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 UHMK1Q8TAS1 419 aaKnown RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 FBF1Q8TES7 1133 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PEX13Q92968 403 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 MIB2Q96AX9 1013 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 ZDHHC12Q96GR4 267 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 SLC41A2Q96JW4 573 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 INSM2Q96T92 566 aaPredicted RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 CYTH2Q99418 400 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 WDR83Q9BRX9 315 aaKnown RBP10.06□□□□□ -0.8
NEDD8-202ENST00000396828 TWSG1Q9GZX9 223 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 RAB33BQ9H082 229 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PPCSQ9HAB8 311 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 ZNF446Q9NWS9 450 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PADI1Q9ULC6 663 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PKP3Q9Y446 797 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PCDHGA6Q9Y5G7 932 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 FAM169AQ9Y6X4 670 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 PCSK5Q92824 1860 aa10.06□□□□□ -0.8
NEDD8-202ENST00000396828 CELSR2Q9HCU4 2923 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 GLYATL1P3A0A0U1RQE8 302 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 EXOC1LA0A1B0GW35 172 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 MROH6A6NGR9 719 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 LDB2O43679 373 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 SGTAO43765 313 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 LPOP22079 712 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-202ENST00000396828 NMBRP28336 390 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 SPAM1P38567 509 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 HADHAP40939 763 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 KLRB1Q12918 225 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 CHAF1BQ13112 559 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 MSLNQ13421 630 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-202ENST00000396828 TUBB3Q13509 450 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 IL10RAQ13651 578 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 GTF2H3Q13889 308 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 TSTD2Q5T7W7 516 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 METRNLQ641Q3 311 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 CPZQ66K79 652 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 LCN10Q6JVE6 187 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ZNF449Q6P9G9 518 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 CES3Q6UWW8 571 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 DDHD1Q8NEL9 900 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 STYXQ8WUJ0 223 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 MFSD3Q96ES6 412 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 CERS2Q96G23 380 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ZIM3Q96PE6 472 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ROPN1BQ9BZX4 212 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-202ENST00000396828 WWP1Q9H0M0 922 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 EPB41L4BQ9H329 900 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ACTL8Q9H568 366 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ACSS3Q9H6R3 686 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ROPN1Q9HAT0 212 aaPredicted RBP10.05□□□□□ -0.8
NEDD8-202ENST00000396828 IMP3Q9NV31 184 aaKnown RBP10.05□□□□□ -0.8
NEDD8-202ENST00000396828 FAM8A1Q9UBU6 413 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 FETUBQ9UGM5 382 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 RIMKLBQ9ULI2 386 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 POLHQ9Y253 713 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 MAN2B2Q9Y2E5 1009 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 PCDHB3Q9Y5E6 796 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ARL5AQ9Y689 179 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 IKBKGQ9Y6K9 419 aa10.05□□□□□ -0.8
NEDD8-202ENST00000396828 ZCWPW2A0A1B0GU75 182 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 CCDC78A2IDD5 438 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 OR5K3A6NET4 321 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 STX7O15400 261 aaKnown RBP10.04□□□□□ -0.8
NEDD8-202ENST00000396828 SHBGP04278 402 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 CCNYL3P0C7X3 344 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 HALP42357 657 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 UQCRFS1P47985 274 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 PRAMEP78395 509 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 MGAT5Q09328 741 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 NAB1Q13506 487 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 THOC5Q13769 683 aaKnown RBP10.04□□□□□ -0.8
NEDD8-202ENST00000396828 GPR19Q15760 415 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 LDLRAP1Q5SW96 308 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 CEP85LQ5SZL2 805 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 HIST2H2BCQ6DN03 193 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 KIAA0930Q6ICG6 404 aaPredicted RBP10.04□□□□□ -0.8
NEDD8-202ENST00000396828 TCTN3Q6NUS6 607 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 ASB18Q6ZVZ8 466 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 KCNMB4Q86W47 210 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 CTAGE3PQ8IX95 158 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 RBM12BQ8IXT5 1001 aaKnown RBP10.04□□□□□ -0.8
NEDD8-202ENST00000396828 CNPY4Q8N129 248 aa10.04□□□□□ -0.8
NEDD8-202ENST00000396828 TEX19Q8NA77 164 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms