RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 AARSD1Q9BTE6 412 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 DERL2Q9GZP9 239 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 SLC25A51Q9H1U9 297 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 RANGRFQ9HD47 186 aaPredicted RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 NT5MQ9NPB1 228 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 ACOXLQ9NUZ1 547 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 OSER1Q9NX31 292 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 UBQLN1Q9UMX0 589 aaKnown RBP6.65□□□□□ -1.35
VPS39-202ENST00000348544 FAM50BQ9Y247 325 aa6.65□□□□□ -1.35
VPS39-202ENST00000348544 TRBV5-3A0A0A0MS03 114 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 KRT87PA6NCN2 255 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 UNCXA6NJT0 531 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 C19orf81C9J6K1 198 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 E9PQ18 207 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 KLK8O60259 260 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GJB3O75712 270 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 F9P00740 461 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ATXN1LP0C7T5 689 aaKnown RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 CA5AP35218 305 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 HTR2BP41595 481 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 PIK3CBP42338 1070 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 TUFMP49411 452 aaKnown RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 GZMMP51124 257 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 UGT2B15P54855 530 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 LILRA4P59901 499 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GTF2H3Q13889 308 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 SMU1Q2TAY7 513 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 PROX2Q3B8N5 592 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 FAM174BQ3ZCQ3 159 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RUNDC3AQ59EK9 446 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MANEALQ5VSG8 457 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 FAM171A1Q5VUB5 890 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 AFMIDQ63HM1 303 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 LBX2Q6XYB7 198 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GCNT7Q6ZNI0 430 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 Q6ZPB1 254 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 ARMCX2Q7L311 632 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 TSPYL5Q86VY4 417 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 CALHM3Q86XJ0 350 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RIOX2Q8IUF8 465 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ZDHHC21Q8IVQ6 265 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 CYP4Z2PQ8N1L4 340 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 NATD1Q8N6N6 113 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 FLAD1Q8NFF5 587 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 IPCEF1Q8WWN9 437 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 RNF34Q969K3 372 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 EMID1Q96A84 441 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 PYURFQ96I23 114 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GJD4Q96KN9 370 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 KLHL5Q96PQ7 755 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 APOL4Q9BPW4 351 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 BEX2Q9BXY8 128 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 TNKS2Q9H2K2 1166 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RUBCNLQ9H714 662 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 POPDC3Q9HBV1 291 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 AMBNQ9NP70 447 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GIMAP4Q9NUV9 329 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MPP6Q9NZW5 540 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 CACNG4Q9UBN1 327 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RAPGEFL1Q9UHV5 662 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ZNF112Q9UJU3 913 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MKLN1Q9UL63 735 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GINS2Q9Y248 185 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GRIP1Q9Y3R0 1128 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 PEX16Q9Y5Y5 336 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 LYVE1Q9Y5Y7 322 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ARL5AQ9Y689 179 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ANKRD36A6QL64 1941 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MEIOCA2RUB1 952 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MYBPHLA2RUH7 354 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 STX16O14662 325 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MUSKO15146 869 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 GLP2RO95838 553 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 LGALS2P05162 132 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RPLP0P05388 317 aaKnown RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 CAPN1P07384 714 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ZNF286BP0CG31 522 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 HOXC13P31276 330 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RRM2P31350 389 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ACVR1Q04771 509 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 TNFAIP1Q13829 316 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 DOC2BQ14184 412 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 NR6A1Q15406 480 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 TBCEQ15813 527 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 TYSND1Q2T9J0 566 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 AP5B1Q2VPB7 878 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 C18orf21Q32NC0 220 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 ZMAT1Q5H9K5 638 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 SPANXN4Q5MJ08 99 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 SPANXN2Q5MJ10 180 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 KIAA1614Q5VZ46 1190 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 SLC27A1Q6PCB7 646 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 IL27RAQ6UWB1 636 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 PRR23CQ6ZRP0 262 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 ZNF551Q7Z340 670 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 NOXA1Q86UR1 476 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 KBTBD8Q8NFY9 601 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 OR56A4Q8NGH8 313 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 OR13C4Q8NGS5 318 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 MAP6Q96JE9 813 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms