RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 REC114Q7Z4M0 266 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ZC3HC1Q86WB0 502 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF283Q8N7M2 679 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 NAT8LQ8N9F0 302 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 KDF1Q8NAX2 398 aaPredicted RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF540Q8NDQ6 660 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 OR2L8Q8NGY9 312 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SFT2D1Q8WV19 159 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLC35C1Q96A29 364 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 CMTM3Q96MX0 182 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SORCS2Q96PQ0 1159 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLC38A3Q99624 504 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 IL12RB2Q99665 862 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 EBF4Q9BQW3 602 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 C7orf50Q9BRJ6 194 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLC25A32Q9H2D1 315 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SMURF1Q9HCE7 757 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 CALML5Q9NZT1 146 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF451Q9Y4E5 1061 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLC22A7Q9Y694 548 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 KNDC1Q76NI1 1749 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ANKDD1BA6NHY2 528 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SOCS2O14508 198 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 EI24O14681 340 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 EIF3DO15371 548 aaKnown RBP eCLIP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 AMHP03971 560 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 NR3C1P04150 777 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 CLEC2LP0C7M8 214 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 RFC2P35250 354 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 PREPP48147 710 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SRP9P49458 86 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ERVK-25P63136 954 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 GTF2IP78347 998 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SNTB1Q13884 538 aaKnown RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 N4BP2L1Q5TBK1 243 aaPredicted RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 CD276Q5ZPR3 534 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 IL31Q6EBC2 164 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 TRIM46Q7Z4K8 759 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 NRARPQ7Z6K4 114 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SLITRK4Q8IW52 837 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 TAB3Q8N5C8 712 aaPredicted RBP4.08□□□□□ -1.76
NEDD4-201ENST00000338963 FBXL20Q96IG2 436 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 OR2M2Q96R28 347 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 LGMNQ99538 433 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 ERVK-6Q9BXR3 956 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 SDCBP2Q9H190 292 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 KLK4Q9Y5K2 254 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 U3KQV3 271 aa4.08□□□□□ -1.76
NEDD4-201ENST00000338963 FAM240BA0A1B0GVZ2 78 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L5A8MUK1 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L15C9J2P7 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L12C9JPN9 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L11C9JVI0 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L21D6R901 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L18D6R9N7 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L22D6RA61 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L19D6RCP7 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L20D6RJB6 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 UGDHO60701 494 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SDC3O75056 442 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TIPRLO75663 272 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SCO1O75880 301 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PRAMEF1O95521 474 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 APOC3P02656 99 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SNRPB2P08579 225 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC2A1P11166 492 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ADORA2AP29274 412 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CALCRP30988 508 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ACSL1P33121 698 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 BMI1P35226 326 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CSKP41240 450 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RORCP51449 518 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP17L24Q0WX57 530 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ADPRMQ3LIE5 342 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ARHGAP40Q5TG30 622 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 FAM46CQ5VWP2 391 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 EIF5AL1Q6IS14 154 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HSDL2Q6YN16 418 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF367Q7RTV3 350 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ZBTB8OSQ8IWT0 167 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 C9orf62Q8N4C0 152 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 C4orf32Q8N8J7 132 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 OR2L5Q8NG80 312 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF384Q8TF68 577 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 GTF3C2Q8WUA4 911 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ASB13Q8WXK3 278 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HGDQ93099 445 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CHFRQ96EP1 664 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SERINC2Q96SA4 455 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TRIM2Q9C040 744 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLIRPQ9GZT3 109 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PLSCR3Q9NRY6 295 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC6A14Q9UN76 642 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHGA2Q9Y5H1 932 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TULP4Q9NRJ4 1543 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RFPL4AA6NLU0 287 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RFPL4AL1F8VTS6 287 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PMM2O15305 246 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DHX15O43143 795 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PRKYO43930 277 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms